BO25785.complete Sequence
1108 bp assembled on 2010-11-18
GenBank Submission: KX794827
> BO25785.complete
GAAGTTATCAGTCGACATGGACAAGATAATGATTTGCATCATTGGGTCGG
GAAACTGGGCCACTACCATAGCCCGCAATGTGGGCAGAAACGTGCTGAAT
TCGCAGACACTGGACGAAAAGGTGCCCATGTACGTTTATGAGGAAATTGT
TGAAGGTCGCAAGCTCACGGAAATCATCAACACCACCCACATAAATTCCA
AGTACATGCCGAACTTTGAACTGCCGCCAAATATTGTGGCCGTGGATGAT
ATCGTGACTACGGCTCGAGATGCGGACATTATAATATTCGCCATTCCGCC
GACTTTCGTGAGTAGCTGCTGCAAGACGCTGCTCGGAAAAGTCAAGCCCA
CGGCCCACGCCGTTTCCCTGATCAAAGGATTCGAGCGCGGCGACGATGGC
CAGTTCGTCCTGATTTCGCAGATTATAATGCGGCAGCTAAAGATTCCCTG
CTCCGTCCTGGTCGGCTGTAACTTGGCCCATGAGCTGGCCCACGACCACT
TTGCCGAGGGCACAGTTGGCTGTCGGGATCAGAAGTATTACAGGGTGCTC
CACGACATATTCAAGTCGCCCACTTTCCGCGTGGTGGTCACCGAGGATGC
CGACTGTGTGGAGATCTGTTCCACTCTAAGGAACATCATTGCCTTTGCGG
CTGGCTGTTCCGACGGGATGGAGCTGAATGAGAACACCAAGGGAGGCATC
ATCAGGAGAGGATTTCTGGAGATGCTTCAGTTCGTCGATGTGTTCTATCC
CGGCTGCCGCATGGGAACCTTTTTTGAGTCGTGCGGAATATCCGATTTGG
TTACTAGTTGTTATGCAAACCGCAATCGCAAGTTGGCCGAAGCTTTTGTG
AAGACGGGCAAACCCTTGAGCGAACTGGAGCACATTCTCATTCCAGGACA
CGAGCCACTGGGTCCGGTGACAGCGGAGCTGGTGCATCATATGCTCAAGA
AGAAGGGCTTGGAGGACAAATTCCCCCTCTTTACAACTGTGTACAGAATC
TGCACTGGAGACTATCCACTGCAGCGTCTGGTCGAAACTCTGATTAAGGC
ACGCGAGGATATATTTCACCCGCTCCATACTTTCCAATTGGCAAGCTTTC
TAGACCAT
BO25785.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:34:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3215-RA | 1077 | CG3215-PA | 1..1074 | 17..1090 | 5265 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:34:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3215-RA | 1209 | CG3215-RA | 73..1146 | 17..1090 | 5265 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:34:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23129895..23130117 | 239..17 | 1070 | 98.7 | Minus |
| 2R | 25286936 | 2R | 23129627..23129833 | 442..236 | 1020 | 99.5 | Minus |
| 2R | 25286936 | 2R | 23129357..23129547 | 631..441 | 955 | 100 | Minus |
| 2R | 25286936 | 2R | 23129114..23129298 | 815..631 | 895 | 98.9 | Minus |
| 2R | 25286936 | 2R | 23128906..23129060 | 969..815 | 775 | 100 | Minus |
| 2R | 25286936 | 2R | 23128752..23128848 | 1062..966 | 455 | 97.9 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:34:07 has no hits.
BO25785.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-18 11:32:45 Download gff for
BO25785.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3215-RA | 73..1146 | 17..1092 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:33:02 Download gff for
BO25785.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3215-RA | 73..1146 | 17..1092 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:15:54 Download gff for
BO25785.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3215-RA | 73..1146 | 17..1092 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:15:54 Download gff for
BO25785.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23128664..23128694 | 1063..1092 | 93 | <- | Minus |
| 2R | 23128752..23128844 | 970..1062 | 98 | <- | Minus |
| 2R | 23128906..23129059 | 816..969 | 100 | <- | Minus |
| 2R | 23129114..23129297 | 632..815 | 98 | <- | Minus |
| 2R | 23129357..23129545 | 443..631 | 100 | <- | Minus |
| 2R | 23129627..23129833 | 236..442 | 99 | <- | Minus |
| 2R | 23129899..23130117 | 17..235 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:33:02 Download gff for
BO25785.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19016187..19016217 | 1063..1092 | 93 | <- | Minus |
| arm_2R | 19016275..19016367 | 970..1062 | 98 | <- | Minus |
| arm_2R | 19016429..19016582 | 816..969 | 100 | <- | Minus |
| arm_2R | 19016637..19016820 | 632..815 | 98 | <- | Minus |
| arm_2R | 19016880..19017068 | 443..631 | 100 | <- | Minus |
| arm_2R | 19017150..19017356 | 236..442 | 99 | <- | Minus |
| arm_2R | 19017422..19017640 | 17..235 | 98 | | Minus |
BO25785.pep Sequence
Translation from 16 to 1108
> BO25785.pep
MDKIMICIIGSGNWATTIARNVGRNVLNSQTLDEKVPMYVYEEIVEGRKL
TEIINTTHINSKYMPNFELPPNIVAVDDIVTTARDADIIIFAIPPTFVSS
CCKTLLGKVKPTAHAVSLIKGFERGDDGQFVLISQIIMRQLKIPCSVLVG
CNLAHELAHDHFAEGTVGCRDQKYYRVLHDIFKSPTFRVVVTEDADCVEI
CSTLRNIIAFAAGCSDGMELNENTKGGIIRRGFLEMLQFVDVFYPGCRMG
TFFESCGISDLVTSCYANRNRKLAEAFVKTGKPLSELEHILIPGHEPLGP
VTAELVHHMLKKKGLEDKFPLFTTVYRICTGDYPLQRLVETLIKAREDIF
HPLHTFQLASFLDH
BO25785.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:45:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3215-PA | 358 | CG3215-PA | 1..358 | 1..358 | 1885 | 100 | Plus |
| Gpdh-PE | 350 | CG9042-PE | 3..343 | 2..342 | 1025 | 54 | Plus |
| Gpdh-PA | 350 | CG9042-PA | 3..343 | 2..342 | 1025 | 54 | Plus |
| Gpdh-PG | 353 | CG9042-PG | 3..343 | 2..342 | 1025 | 54 | Plus |
| Gpdh-PC | 353 | CG9042-PC | 3..343 | 2..342 | 1025 | 54 | Plus |
