Clone BO25789 Report

Search the DGRC for BO25789

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:257
Well:89
Vector:pDNR-Dual
Associated Gene/TranscriptCG16852-RA
Protein status:BO25789.pep: Imported from assembly
Sequenced Size:745

Clone Sequence Records

BO25789.complete Sequence

745 bp assembled on 2010-06-29

GenBank Submission: KX797356

> BO25789.complete
GAAGTTATCAGTCGACATGCTTAGTTCAAAAAGTGACACTTCTGGAGACG
ATATCTCTATAACTGCACAAGCAGAAAAAAGAGTGGATGATAGCATCAGA
GCGCCATCTATTGGCTGGAATGCTGAGCACAAAGATGTTCAGATTCCAAG
GGACCAACTAACCCACAGGCAGATCAGCAAGTGCAATTTGTTTGAGGAAT
ACATCAAGCTCCCAAAGAGTGAATATGGACAAACAAGCCGCATGAAGCGA
TTCCGATCCGAAGAGTTAGCTATTAAGCAAGAAGATCAAATCGTGGAGCA
TAGATCATCGAGTCTTTCGCGGCTATCGGATGTCACAATCAAGCCCACCT
GCGAGGTGAGTAGTCAGACTTCGTGGACAGCAGCGGACGAGAGTAATATG
AATAGCAAGGATTTGGAGGCGAAGCTGGCGGCTGTACGCGGCGGTGGTAT
CGATCTCGAAACGGACAAGCCCAGCAAGATCCAGCAGCACACGATCCACA
TCGAGGTGGAGTCGGTGACATCGGCCACGGCTATGCAAAGACCCCCACTG
CACCAAAGGATGTGGCAGGTCCTTGTGCAGACGGCGGATACGATTGTCGC
ATTCGCCTCTATAATCGGCGAGAATTTAACAGTGGCACTCTTCATTGTCC
TGTGCCTGTGGTGCCTTTACCTCTTACTAAGCCACTTTTATGGCAACTTG
CAGACCAATGTCGGCATGCCGTCCAAAGCAAGCTTTCTAGACCAT

BO25789.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:35:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG16852-RA 714 CG16852-PA 1..711 17..727 3555 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:35:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG16852-RA 835 CG16852-RA 48..760 15..727 3565 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:35:45
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13541124..13541571 280..727 2240 100 Plus
2L 23513712 2L 13540798..13541064 15..281 1335 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:35:46 has no hits.

BO25789.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-29 17:44:16 Download gff for BO25789.complete
Subject Subject Range Query Range Percent Splice Strand
CG16852-RA 50..760 17..729 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:02:37 Download gff for BO25789.complete
Subject Subject Range Query Range Percent Splice Strand
CG16852-RA 50..760 17..729 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:45:00 Download gff for BO25789.complete
Subject Subject Range Query Range Percent Splice Strand
CG16852-RA 50..760 17..729 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:45:00 Download gff for BO25789.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13541126..13541571 282..729 99   Plus
2L 13540800..13541064 17..281 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:02:37 Download gff for BO25789.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13540800..13541064 17..281 100 -> Plus
arm_2L 13541126..13541571 282..729 99   Plus

BO25789.pep Sequence

Translation from 16 to 745

> BO25789.pep
MLSSKSDTSGDDISITAQAEKRVDDSIRAPSIGWNAEHKDVQIPRDQLTH
RQISKCNLFEEYIKLPKSEYGQTSRMKRFRSEELAIKQEDQIVEHRSSSL
SRLSDVTIKPTCEVSSQTSWTAADESNMNSKDLEAKLAAVRGGGIDLETD
KPSKIQQHTIHIEVESVTSATAMQRPPLHQRMWQVLVQTADTIVAFASII
GENLTVALFIVLCLWCLYLLLSHFYGNLQTNVGMPSKASFLDH

BO25789.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:38:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG16852-PA 237 CG16852-PA 1..237 1..237 1209 100 Plus