Clone BO25817 Report

Search the DGRC for BO25817

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:258
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptCG17005-RB
Protein status:BO25817.pep: Imported from assembly
Sequenced Size:1858

Clone Sequence Records

BO25817.complete Sequence

1858 bp assembled on 2010-06-30

GenBank Submission: KX795519

> BO25817.complete
GAAGTTATCAGTCGACATGGAGGAAGAACCCTTAGTTTCCCCTTCGGTTC
CAATTCGAAAGCCATGTGGTACGTTTAAGCCTCCGGCCATCTACCAGAAG
CTGATGATTGACAATCTGACTGTCATTCGACCGCCCATCCTGAAGATCTT
CTACTGGGAGAGCTTTGAAATAACGGGCTTGAATCGGAAGCTGCGTTCGA
ACCGCATAGAGCATGAGCATACATTCAAGATACCTATTCGCCAGATCCAC
AGTCATCCCCTGAAAATGGTCTTCTGGATCCGTAATCTATCGGCCGCGAA
CGCCAAGTTGACTCTAAAGCGTATCCAAAACTGTCAATGCCAGCCGCAGC
AGACCCAAGTCGGATTCAATCAGTTCCGCCAGCTCTTCCACTGCCCACAT
CGCAGACTGCTCCACATCAGCCAGGAGATCCTGTCTATCAATCCTGATGA
GGTGGTGGCCCTCACCGTAACGGCCTATTTCTTCTTGTACGGCGAACACC
TGCTCACCTACGAAGTTCACACTGAAGACAATCGCAAGTTTCTGTGGCAT
TTTCATCTGGAGATCTCGTCCTTTGACCCCGAAAAGTGTCTACTCACTAA
AGAGCTGCTGCCGGTAAACATAAAAAGCTTTTACCATATAACGCAGCCGT
TGTGGGTCCAAAATATCACGATGTCACACTTGTCATTCTCGTTTGCTTCA
AGGGATCGTGGCCTCAAGCTGCTCAATATGAATCTCACCGTGCCTCGACA
GAGTGTGTGGCCCCTCCTGGTGGACTATCGACCCTTGGACTACGAAAATG
AGGCGGAAATTGTCTTAACATATGAAAATACCAAGGCTCGCTACAAAATT
AAAGCACGAGGCGTGCTGACTGACGAGAAAGAGCAGACGGACATGCCCTT
GAAGGATCGGGAATGCGTCGATTTCCTGCACGTCATCTACCCTAATAGAG
TAAACTTTGAAATCTGCCTGCGTGAAGATCGGACGCAGCTCGTCAATGTC
CATAACTACGGACAGCAGTGCATGGAGTTTCGGTGGCAGAGCTACATAAT
CAACGATTTTTTTGCGGTTGTGTTCAATCCGCCTATTTTCCGCCTTAAAG
GCCATCACTCGAAGCTGTGCGAGATCAGAGTGACGGTGTTCGACCGACTG
GTCCACTTCCGCCGCATTCCCATCGTGCTGGAGGTGCACCGCATTCTCGA
TCGCGCCACCATCATAGCCAAGCAGGAGCTGGAGGAGGTGGAGTCCATCG
ACGATCCCAAATGGAAAGAGGACAGCTACGTGGAGCACGTCTATCTGCAC
CTGAACATCCGCACCAATATTAAGCCCGCTCTGGACTCTGAGGAGCTGGA
ACCGGGCGATAGGATCGACCCCACGGCTGGACCCGAACCCTGTAGCCAAG
TTGGTCCTGGGGAAGCCAGGAGAGGCAACGGCTCGGGTGACGGTCCATCG
ACACCTGCACCGAACACCGAGGAGCAGCGCAAAGAGGCCGAGCGCAAGGA
GCTGATCTCCCGACTGGTGGCCAAGAACAAACTCAATCCCAACGAGATCA
TCGAGCTCAGCATGGCCATTGATCAGCGAATAACCATTTTCGAGAAGCTA
TTCTGGAAGTACCTCAGCAAGTCCAAGTTCATGCGAATCAATGGTGAGCG
CAAGCGTCAGAAGGTGGTCAAGACCTACGAGCAAGTGGTGTCCCCGGATA
AGACGACTCCCCTGGAGGCAGCATCGGAAATTGATCGAAATCACATCATG
GATCTGCTGTCCCGACTGATGCAGGAGGCCATCAACGACTTGGCCAAGAA
CTGGGTCTTTATTCCGTCGCAGTACTACGAACGCAACCATGCAAGCTTTC
TAGACCAT

BO25817.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:43:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG17005-RE 1827 CG17005-PE 1..1824 17..1840 8880 99.1 Plus
CG17005-RB 1827 CG17005-PB 1..1824 17..1840 8880 99.1 Plus
CG17005-RD 180 CG17005-PD 1..161 17..177 805 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:43:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG17005-RE 2182 CG17005-RE 57..1880 17..1840 8880 99.1 Plus
CG17005-RB 1917 CG17005-RB 57..1880 17..1840 8880 99.1 Plus
CG17005-RC 1969 CG17005-RC 269..1932 177..1840 8080 99 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:43:12
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9329077..9329777 1040..1740 3400 99 Plus
2L 23513712 2L 9328012..9328354 177..519 1700 99.7 Plus
2L 23513712 2L 9328413..9328696 520..803 1390 99.3 Plus
2L 23513712 2L 9328752..9328992 801..1041 1130 97.9 Plus
2L 23513712 2L 9327800..9327960 17..177 805 100 Plus
2L 23513712 2L 9329931..9330030 1741..1840 485 99 Plus
Blast to na_te.dros performed on 2014-11-27 10:43:13 has no hits.

BO25817.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-30 16:21:06 Download gff for BO25817.complete
Subject Subject Range Query Range Percent Splice Strand
CG17005-RB 57..1880 17..1842 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:41:10 Download gff for BO25817.complete
Subject Subject Range Query Range Percent Splice Strand
CG17005-RB 57..1880 17..1842 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:29:07 Download gff for BO25817.complete
Subject Subject Range Query Range Percent Splice Strand
CG17005-RB 57..1880 17..1842 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:29:07 Download gff for BO25817.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9328754..9328992 803..1041 97 -> Plus
2L 9327800..9327960 17..177 100 -> Plus
2L 9328013..9328354 178..519 99 -> Plus
2L 9328413..9328695 520..802 99 -> Plus
2L 9329079..9329777 1042..1740 98 -> Plus
2L 9329931..9330030 1741..1842 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:41:10 Download gff for BO25817.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9327800..9327960 17..177 100 -> Plus
arm_2L 9328013..9328354 178..519 99 -> Plus
arm_2L 9328413..9328695 520..802 99 -> Plus
arm_2L 9328754..9328992 803..1041 97 -> Plus
arm_2L 9329079..9329777 1042..1740 98 -> Plus
arm_2L 9329931..9330030 1741..1842 97   Plus

BO25817.pep Sequence

Translation from 16 to 1858

> BO25817.pep
MEEEPLVSPSVPIRKPCGTFKPPAIYQKLMIDNLTVIRPPILKIFYWESF
EITGLNRKLRSNRIEHEHTFKIPIRQIHSHPLKMVFWIRNLSAANAKLTL
KRIQNCQCQPQQTQVGFNQFRQLFHCPHRRLLHISQEILSINPDEVVALT
VTAYFFLYGEHLLTYEVHTEDNRKFLWHFHLEISSFDPEKCLLTKELLPV
NIKSFYHITQPLWVQNITMSHLSFSFASRDRGLKLLNMNLTVPRQSVWPL
LVDYRPLDYENEAEIVLTYENTKARYKIKARGVLTDEKEQTDMPLKDREC
VDFLHVIYPNRVNFEICLREDRTQLVNVHNYGQQCMEFRWQSYIINDFFA
VVFNPPIFRLKGHHSKLCEIRVTVFDRLVHFRRIPIVLEVHRILDRATII
AKQELEEVESIDDPKWKEDSYVEHVYLHLNIRTNIKPALDSEELEPGDRI
DPTAGPEPCSQVGPGEARRGNGSGDGPSTPAPNTEEQRKEAERKELISRL
VAKNKLNPNEIIELSMAIDQRITIFEKLFWKYLSKSKFMRINGERKRQKV
VKTYEQVVSPDKTTPLEAASEIDRNHIMDLLSRLMQEAINDLAKNWVFIP
SQYYERNHASFLDH

BO25817.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:09:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG17005-PE 608 CG17005-PE 1..608 1..608 3221 100 Plus
CG17005-PB 608 CG17005-PB 1..608 1..608 3221 100 Plus
CG17005-PC 54 CG17005-PC 1..54 1..54 289 100 Plus
CG17005-PD 59 CG17005-PD 1..54 1..54 289 100 Plus