BO25847.complete Sequence
1804 bp assembled on 2010-07-15
GenBank Submission: KX796597
> BO25847.complete
GAAGTTATCAGTCGACATGGCGAATAATCAGCCCCCGACAACGAATGCTA
CGCGTAAAGATAAGCGCATAGAGCGGGACGAGAACCGTGGCCAATGGAAG
AGCAAGTCGGAGTTTATCCTCTCGCTCCTTGGATATGCCATTGGCATTGG
CAATGTGTGGCGATTTCCCTATCTCTGCTACCGCAGTGGCGGCGCCGCCT
TTCTGATTCCCTACCTATTGATGGTAATTTTAGCCGGCATACCCCTGTTT
TATATGGAAATTCTGATCGGTCAGTTCTCGAGCACCGGATGCACTGGCAT
GTTTCGCATGACGCCTCTGCTGAAGGGAACGGGAATCGCTCAGGTGGTGG
TCAATGCCTACTGCGTGTGCTACTACTCGGTGATCATATCGTATCCCATT
CGGATGATCTTCTACTGTTTCTTCAAGAAGGTGCCCTGGGAGGACTGTTC
CAATTCATGGAATACCGACGACTGTGTAACCGCGTCTGACATGGGAAAGC
AAAATAGTAGTGATGTGTTCAAAACTTCCGCCGATGAATTCTTCCACTTG
GAAGTACTTAGAATCTCAACAGACATCTCCGACTTGGGTGGCATGGTATG
GGAACAATTAACTGCCTTGATTATCACATGGATTATTATTTACTTCTGCC
TAATGCGAGGAATTAAGTCGGTTGGCAAGGTTGTGTACTTTACAGTCCCC
TTCCCTTACTTGCTGCTCTTCATTCTGCTCATCAGAGGAGCCACTTTGCC
TGGAGCCTGGAAAGGCATAAAGTTCTACCTGTATCCGGAGTGGCACCGCT
TGCTGGACCTCAAAGTCTGGGCCGATGCCGCCGTCCAGATGTTCTTTGGC
ATTGGTCCCGGCTGGGGTGGTATCGTCAACATGGCCAGTTTCAGTAGCTT
TCGAAATAACGCCAAGTGCGACTCGGTTCTCATAGTATCGATCAATGTGT
TCACCAGCTTATTGGCCGGATTTGTGGTCTTCTCCGTGTTGGGTTTTCTC
TCTGAAAAATCGGGCATACCCGTGGAATCGGTGGCCACTGGAGGAGCTGG
ACTGGCCTTCGTCACGTATCCGGAGGCCATTGCCTTGCTGCCTGTCCCGC
AGCTCTGGGCGCTCATGTTTTTCTTTATGCTCTTTTTGCTGGGCATCGAC
AGTGTGTTTGTACAACTGGAGGCCATCATGTCATCGATATTGGATGAGTG
GTATTGGGTGAGAAGTCACAAGTGCAAACTAACGCTCATTTCGTGCTTAA
TCTTTCTCGGACTCTCGTCAATAATGTGCACAAATGGCGGCATGTTTATT
CTTCAGCTGTTTGACTGGTACTCCTCGGCGATAGCCGTAATTGTCATTTG
CCTGGTGGAGATTATTATGGTCGCCTGGATTTATGGCATAAAAAATTTCA
TGTTAGATGTCGAGTTTATGCTCGGAAAACGGCCAACTCTATATTGGAGA
ATCGTGTGGCAGGTCGTCACACCTGTCATTATAATTTTTATTCTTATAAC
TAGCATTGTATTCATAAGGACAATCACCTATAATAACATCCCGTATCCTC
AGTGGGCCATTATAATCGGCTGGGCCAGTTGTTTTACATCAGTTATGTGG
ATACCGCTCTACATATTCTATATCATGATCCGTAAGCGGGCCACACTATG
TGACAGCCTAAAGAAACGCCTAAAACCTTTGGACTGGACACCTGCGGATC
CACAAGATCGTGCAGAATACGAGGCCTTCCGCAGGCAACGCCGAATGCCG
GGATTTATGTCTGACACGGACATGGAGAGCTCGAAGGCAAGCTTTCTAGA
CCAT
BO25847.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:12:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ntl-RA | 1773 | CG7075-PA | 1..1770 | 17..1786 | 8760 | 99.7 | Plus |
| Ntl-RB | 1629 | CG7075-PB | 35..1626 | 195..1786 | 7870 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:12:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ntl-RA | 2069 | CG7075-RA | 147..1916 | 17..1786 | 8760 | 99.7 | Plus |
| Ntl-RB | 1860 | CG7075-RB | 116..1707 | 195..1786 | 7870 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:12:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7712482..7712816 | 670..1004 | 1630 | 99.1 | Plus |
| 2L | 23513712 | 2L | 7713539..7713838 | 1487..1786 | 1485 | 99.7 | Plus |
| 2L | 23513712 | 2L | 7711831..7712127 | 194..490 | 1470 | 99.7 | Plus |
| 2L | 23513712 | 2L | 7713280..7713480 | 1286..1486 | 1005 | 100 | Plus |
| 2L | 23513712 | 2L | 7711026..7711203 | 17..194 | 890 | 100 | Plus |
| 2L | 23513712 | 2L | 7712876..7713028 | 1004..1156 | 750 | 99.3 | Plus |
| 2L | 23513712 | 2L | 7713095..7713225 | 1156..1286 | 655 | 100 | Plus |
| 2L | 23513712 | 2L | 7712304..7712429 | 547..672 | 630 | 100 | Plus |
| 2L | 23513712 | 2L | 7712183..7712238 | 491..546 | 280 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 05:12:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 2534..2568 | 1502..1468 | 121 | 82.9 | Minus |
BO25847.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-15 11:01:49 Download gff for
BO25847.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ntl-RA | 7..1776 | 17..1788 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:07:07 Download gff for
BO25847.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ntl-RA | 147..1916 | 17..1788 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:45:55 Download gff for
BO25847.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ntl-RA | 147..1916 | 17..1788 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:45:55 Download gff for
BO25847.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7711026..7711203 | 17..194 | 100 | -> | Plus |
| 2L | 7711832..7712127 | 195..490 | 99 | -> | Plus |
| 2L | 7712183..7712238 | 491..546 | 100 | -> | Plus |
| 2L | 7712304..7712427 | 547..670 | 100 | -> | Plus |
| 2L | 7712483..7712816 | 671..1004 | 99 | -> | Plus |
| 2L | 7712877..7713028 | 1005..1156 | 99 | -> | Plus |
| 2L | 7713096..7713224 | 1157..1285 | 100 | -> | Plus |
| 2L | 7713280..7713480 | 1286..1486 | 100 | -> | Plus |
| 2L | 7713539..7713838 | 1487..1788 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:07:07 Download gff for
BO25847.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7711026..7711203 | 17..194 | 100 | -> | Plus |
| arm_2L | 7711832..7712127 | 195..490 | 99 | -> | Plus |
| arm_2L | 7712183..7712238 | 491..546 | 100 | -> | Plus |
| arm_2L | 7712304..7712427 | 547..670 | 100 | -> | Plus |
| arm_2L | 7712483..7712816 | 671..1004 | 99 | -> | Plus |
| arm_2L | 7712877..7713028 | 1005..1156 | 99 | -> | Plus |
| arm_2L | 7713096..7713224 | 1157..1285 | 100 | -> | Plus |
| arm_2L | 7713280..7713480 | 1286..1486 | 100 | -> | Plus |
| arm_2L | 7713539..7713838 | 1487..1788 | 99 | | Plus |
BO25847.pep Sequence
Translation from 16 to 1804
> BO25847.pep
MANNQPPTTNATRKDKRIERDENRGQWKSKSEFILSLLGYAIGIGNVWRF
PYLCYRSGGAAFLIPYLLMVILAGIPLFYMEILIGQFSSTGCTGMFRMTP
LLKGTGIAQVVVNAYCVCYYSVIISYPIRMIFYCFFKKVPWEDCSNSWNT
DDCVTASDMGKQNSSDVFKTSADEFFHLEVLRISTDISDLGGMVWEQLTA
LIITWIIIYFCLMRGIKSVGKVVYFTVPFPYLLLFILLIRGATLPGAWKG
IKFYLYPEWHRLLDLKVWADAAVQMFFGIGPGWGGIVNMASFSSFRNNAK
CDSVLIVSINVFTSLLAGFVVFSVLGFLSEKSGIPVESVATGGAGLAFVT
YPEAIALLPVPQLWALMFFFMLFLLGIDSVFVQLEAIMSSILDEWYWVRS
HKCKLTLISCLIFLGLSSIMCTNGGMFILQLFDWYSSAIAVIVICLVEII
MVAWIYGIKNFMLDVEFMLGKRPTLYWRIVWQVVTPVIIIFILITSIVFI
RTITYNNIPYPQWAIIIGWASCFTSVMWIPLYIFYIMIRKRATLCDSLKK
RLKPLDWTPADPQDRAEYEAFRRQRRMPGFMSDTDMESSKASFLDH
BO25847.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:34:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ntl-PA | 590 | CG7075-PA | 1..590 | 1..590 | 3125 | 100 | Plus |
| Ntl-PB | 542 | CG7075-PB | 13..542 | 61..590 | 2799 | 100 | Plus |
| CG1732-PA | 636 | CG1732-PA | 33..606 | 1..549 | 1179 | 38.9 | Plus |
| SerT-PB | 622 | CG4545-PB | 71..586 | 21..535 | 1131 | 40.8 | Plus |
| SerT-PA | 622 | CG4545-PA | 71..586 | 21..535 | 1131 | 40.8 | Plus |
