Clone BO25890 Report

Search the DGRC for BO25890

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:258
Well:90
Vector:pDNR-Dual
Associated Gene/TranscriptCG2533-RA
Protein status:BO25890.pep: Imported from assembly
Sequenced Size:574

Clone Sequence Records

BO25890.complete Sequence

574 bp assembled on 2010-06-29

GenBank Submission: KX798330

> BO25890.complete
GAAGTTATCAGTCGACATGTCGCAACTGATGGAGATGACCCGCCACGTGA
CCTCTTGGCTTGGCTGGACACCGACGCCCACATGCGACGTCGCGGAGGAG
GAGGAGCCGCTGCAGGAATCGTCCGGCATTGTGACCGTACTGGTTCTCTA
CCTGGGCATGGCCGGCATCTTTGCGGCCCTGAGTCTCTGCACCACGACCA
GCGACGACCAGGTGCGGGCCCGGGCCAAGCGGGAACTGATGGCCATGGAG
CGCCGCCAGTTGCAGCGTCTGGAGCGGCAGGGCAGGGCAACGGGGTTAAC
TCTGCTGCCAAACTGGACGACCGCCATGCCATCGCTTATTCGCGAAGTGG
CTGCTCCTAGGCCTTCAGTCATTCAACTGGAAGAGCAGCGCTTGCGGATG
CGTCTGCTCCAGCTAACGGATCAGAAGGAGCAGGAGGAGCACGATTCCCA
GGATTGGCACGATGCTGTGGATGCGCCAGAGGAGGAGCAGGCCACCAGTT
GCCTCGCCCCCAAGAGCCAAAATTCCACTTTCTTTGACCTTCCCTTAGAC
TCCGAAGCAAGCTTTCTAGACCAT

BO25890.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:27:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG2533-RA 543 CG2533-PA 1..540 17..556 2700 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:27:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG2533-RA 772 CG2533-RA 136..675 17..556 2700 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:27:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11603340..11603879 556..17 2700 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:27:20 has no hits.

BO25890.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-29 17:43:59 Download gff for BO25890.complete
Subject Subject Range Query Range Percent Splice Strand
CG2533-RA 136..675 17..558 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:01:04 Download gff for BO25890.complete
Subject Subject Range Query Range Percent Splice Strand
CG2533-RA 136..675 17..558 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:41:43 Download gff for BO25890.complete
Subject Subject Range Query Range Percent Splice Strand
CG2533-RA 136..675 17..558 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:41:43 Download gff for BO25890.complete
Subject Subject Range Query Range Percent Splice Strand
X 11603337..11603879 17..558 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:01:04 Download gff for BO25890.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11497370..11497912 17..558 99   Minus

BO25890.pep Sequence

Translation from 16 to 574

> BO25890.pep
MSQLMEMTRHVTSWLGWTPTPTCDVAEEEEPLQESSGIVTVLVLYLGMAG
IFAALSLCTTTSDDQVRARAKRELMAMERRQLQRLERQGRATGLTLLPNW
TTAMPSLIREVAAPRPSVIQLEEQRLRMRLLQLTDQKEQEEHDSQDWHDA
VDAPEEEQATSCLAPKSQNSTFFDLPLDSEASFLDH

BO25890.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:22:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG2533-PA 180 CG2533-PA 1..180 1..180 924 100 Plus