Clone BO25896 Report

Search the DGRC for BO25896

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:258
Well:96
Vector:pDNR-Dual
Associated Gene/TranscriptCG32117-RA
Protein status:BO25896.pep: Imported from assembly
Sequenced Size:679

Clone Sequence Records

BO25896.complete Sequence

679 bp assembled on 2010-06-29

GenBank Submission: KX799924

> BO25896.complete
GAAGTTATCAGTCGACATGACAAGTTTTCAAATTCGATTGATTTCGGACC
AAAATCTGGTCCTCGTGGACGCCCTACATCACGAGTCGGAGATTTTTGTA
CCCCAGATATACAACAATGACATCGTACTGTGGAACATCATACGAGATCG
TCGGTCGAATCCAAAAGTCGAATTTTGTGAAGAGCCTGTCCAGGGTCAAG
GCAATGGTCAGATCTGCCAGCGCCCACAGATCCAGCCTCGGATAACGACG
GCGACGGCAGGTCTGGCCCCCTGGGCGGCGTCCATCGATGGCAGTCCATT
TAGAAGAGTTGCGGAGGAAGGTTCCCGGTGTCCACTGTTTTCACTCAAGC
TCATCTCGAATGGCAGCGTAGTGCTCGTAGAATGTAATGTCCACGAATCG
GAGATCTTTCTACCGCAGATTTGCGGCCAGTACATAGCCATGAAACGCAT
CACCGGCCACGAACTTTTACTGCCATCCAAACCGAAGATCTCTGCCATCC
AACCAGCTAAGACCAATTGTTTACGCATTCAACCGACTCGCTTCTTTTCA
AAAACGACCAACTTGGATAATCAGGCAAAAAAACGAAGGAAGCGCAAAAG
TCAAGAGCAAACCAATCACTCTGGAGCTGGGGATCAACGAACGTTGAAGT
CCGTGAAACGAGCAAGCTTTCTAGACCAT

BO25896.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:27:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG32117-RA 648 CG32117-PA 1..645 17..661 3195 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:27:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG32117-RA 787 CG32117-RA 40..684 17..661 3195 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:27:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12903028..12903672 661..17 3195 99.7 Minus
Blast to na_te.dros performed on 2014-11-26 15:27:25 has no hits.

BO25896.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-29 17:44:00 Download gff for BO25896.complete
Subject Subject Range Query Range Percent Splice Strand
CG32117-RA 40..684 17..663 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:01:06 Download gff for BO25896.complete
Subject Subject Range Query Range Percent Splice Strand
CG32117-RA 40..684 17..663 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:41:46 Download gff for BO25896.complete
Subject Subject Range Query Range Percent Splice Strand
CG32117-RA 40..684 17..663 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:41:46 Download gff for BO25896.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12903026..12903672 17..663 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:01:06 Download gff for BO25896.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12896126..12896772 17..663 99   Minus

BO25896.pep Sequence

Translation from 16 to 679

> BO25896.pep
MTSFQIRLISDQNLVLVDALHHESEIFVPQIYNNDIVLWNIIRDRRSNPK
VEFCEEPVQGQGNGQICQRPQIQPRITTATAGLAPWAASIDGSPFRRVAE
EGSRCPLFSLKLISNGSVVLVECNVHESEIFLPQICGQYIAMKRITGHEL
LLPSKPKISAIQPAKTNCLRIQPTRFFSKTTNLDNQAKKRRKRKSQEQTN
HSGAGDQRTLKSVKRASFLDH

BO25896.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:12:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG32117-PA 215 CG32117-PA 1..215 1..215 1117 100 Plus