BO25903.complete Sequence
2626 bp assembled on 2010-07-15
GenBank Submission: KX795761
> BO25903.complete
GAAGTTATCAGTCGACATGGAACCAGGAACCATTCCATCGCCTGTTTCAG
CACCAGTTGCTGCGCCTGTGACGCCATCAGCAGTGGCTGCCCCTGTCCAA
GTAGTAAGTCCTGCGGCAGTGGCTCCCGCACCAGCGGCACCGATTGCAGT
CACTCCAGTTGCTCCACCGCCCACCCTTGCAAGTGTGCAACCGGCAACAG
TTACTATTCCAGCTCCAGCTCCAATTGCTGCCGCATCCGTCGCTCCTGTC
GCATCTGTGGCGCCTCCAGTTGTTGCAGCTCCAACTCCGCCGGCAGCAAG
TCCAGTTTCAACACCACCCGTTGCTGTTGCTCAGATTCCGGTCGCTGTTT
CAGCACCAGTGGCACCTCCCGTTGCTGCAACACCCACTCCTGTTGCCCCA
ATTCCTGTAGCTGCGCCTGTGATAGCGACACCACCTGTTGCTGCCTCTGC
CCCCACTCCGGCTGCCGTGACTCCCGTTGTTTCGCCTGTGATCGCCACAC
CACCTGTGGTTCCCGCTAACACCACGGTTCCCGTTGCAGCACCTGTAGCT
GCTGTACCAGCTGCTGTTCCTGTTGTTGCCCCAGTTCTTGCGCCTGCCGT
TGCTCCTGCAGTTGCCCCCGTCGTCGCCGAGACTCCAGCTCCACCACCTG
TTGCTGAGATTCCGGTTGCAACCATACCGGAGTGCGTTGCACCTCTCATC
CCCGAGGTTTCCGTCGTGGCAACGAAACCACTAGCTGCAGCTGAGCCAGT
GGTCGTTGCTCCACCGGCTACTGAAACCCCAGTCGTTGCTCCGGCTGCAG
CTTCCCCCCATGTGTCGGTTGCACCAGCTGTGGAGACCGCAGTGGTCGCT
CCTGTAAGTGCTTCGACTGAGCCCCCGGTAGCTGCTGCGACTCTAACAAC
TGCACCAGAAACGCCAGCCCTTGCTCCAGTCGTTGCCGAGTCCCAAGTTG
CTGCGAATACTGTTGTAGCTACACCTCCTACTCCAGCCCCAGAGCCAGAA
ACCATTGCACCACCTGTTGTTGCAGAAACCCCAGAAGTTGCTTCAGTTGC
TGTTGCTGAGACAACACCACCCGTTGTACCTCCTGTGGCCGCAGAATCAA
TACCGGCGCCAGTCGTTGCCACGACACCAGTTCCTGCAACACTAGCAGTA
ACGGATCCGGATGTCACTGCATCTGCTGTTCCCGAATTACCTCCGGTGAT
CGCTCCATCACCCGTTCCTAGTGCTGTTGCTGAAACTCCTGTCGACTTAG
CGCCACCTGTTCTCCCTCCTGTGGCTGCCGAACCTGTACCAGCTGTAGTG
GCTGAAGAAACTCCTGAGACACCAGCACCAGCATCAGCACCAGTGACCAT
AGCAGCTTTAGATATACCAGAAGTTGCTCCTGTGATCGCCGCACCCTCTG
ATGCACCTGCTGAAGCTCCGTCTGCCGCTGCTCCCATCGTTTCTACTCCA
CCAACTACGGCTTCTGTTCCCGAGACCACGGCACCACCTGCGGCAGTGCC
TACGGAACCTATCGATGTTTCTGTACTATCAGAAGCTGCCATTGAAACGC
CAGTTGCACCGCCTGTCGAAGTTACAACAGAAGTTGCAGTTGCAGACGTT
GCTCCACCTGAGGCAGCTGCGGATTTAATAATCGAGCCTGTGGAACCACC
AGCTCCTATTCCGGATTTATTAGAACAAACTACATCCGTGCCAGCTGTTG
AAGCTGCAGAATCAACATCTTCACCAATACCAGAGACCTCATTACCGCCG
CCAAATGAAGCAGTTGCCTCTCCAGAAGTGGCTGTCGCTCCAATTACAGC
TCCAGAGCCCATACCTGAACCGGAACCAAGCCTAGCGACCCCTACAGAAC
CCATACCTGTGGAGGCACCTGTCGTAATCCAGGAAGCAGTGGATGCTGTA
GAGGTGCCGGTGACAGAAACTTCAACATCGATTCCAGAAACTACGGTTGA
GTATCCTGTAGCCGAAAAAGTCCTGGATCCTGCCATAACTGAAGCTCCTG
TCACTACTCAGGAACCAGATGTTGCAAACATTAATGACGGTGCTCCAGCT
ACCGAAATCACCACACCCGCTGTTGAAATCGTTACTGCTGCTGCAGAAGT
ATCTGATACTGCCATACCGCTCATTGACCCTCCGGTTCCTCAAGAGATCG
CAGTAGCTGAAATTCCAGAGACAGAGACAAAGCCGGCAGAGGTCATTGTT
GAACAGAGCACCATCCCAATAGAGGCACCAGTCCCGGAGGTTTCAAAATA
CGCAGAACCAGTGATTTCTGAAGCTCCAGCTGCCGAAGTACCAATTACGG
CCGGGGACAACCCAGACAATACTAGTGTGGGAATATCTGAAGTTGTTCCC
ACCATTGCAGAGAAAGCAGTTGAAGAGGTTCCCACTTCGGAAATCCCCGA
ACAATCATCGTCACCCTCAGATTCCGTTCCCGTAGCAAAGATAACTCCTT
TGCTAAGAGATCTTCAGACCACCGATGTTTCGCTATTGGCTATTGCAGCC
ACCCTGGATGCCATTGGAGAAAAGCTAAAGGATCAAAAGGCCAGAAATCA
GCAGGTAATGGACAGACTCTGCGAAATCGAGAAAATTCTTGGTCCTCCCA
AATCCAATGCAAGCTTTCTAGACCAT
BO25903.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:13:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpn-RB | 2595 | CG4795-PB | 1..2592 | 17..2608 | 12945 | 100 | Plus |
| Cpn-RA | 2529 | CG4795-PA | 1..1930 | 17..1946 | 9635 | 99.9 | Plus |
| Cpn-RA | 2529 | CG4795-PA | 1929..2526 | 2011..2608 | 2990 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:13:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpn-RB | 2853 | CG4795-RB | 187..2781 | 14..2608 | 12960 | 100 | Plus |
| Cpn-RA | 2787 | CG4795-RA | 187..2119 | 14..1946 | 9650 | 99.9 | Plus |
| Cpn-RA | 2787 | CG4795-RA | 2118..2715 | 2011..2608 | 2990 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:13:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12162959..12165553 | 2608..14 | 12960 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 05:13:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6732..6893 | 481..320 | 154 | 57 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2778..2955 | 653..476 | 152 | 53.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6893 | 373..200 | 150 | 54 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6919 | 413..225 | 146 | 54 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6736..6899 | 378..212 | 144 | 55.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2766..3002 | 614..387 | 136 | 55.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6641..7127 | 1389..914 | 133 | 50.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2592..2661 | 608..533 | 132 | 68.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..6937 | 1244..1032 | 122 | 51.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6831..6941 | 1282..1395 | 122 | 57.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6667..6792 | 1347..1222 | 118 | 57.4 | Minus |
BO25903.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-15 11:02:01 Download gff for
BO25903.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpn-RB | 190..2781 | 17..2610 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:07:14 Download gff for
BO25903.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpn-RB | 190..2781 | 17..2610 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:46:16 Download gff for
BO25903.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpn-RB | 190..2781 | 17..2610 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:46:16 Download gff for
BO25903.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12162955..12165550 | 17..2610 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:07:14 Download gff for
BO25903.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7988677..7991272 | 17..2610 | 99 | | Minus |
BO25903.pep Sequence
Translation from 16 to 2626
> BO25903.pep
MEPGTIPSPVSAPVAAPVTPSAVAAPVQVVSPAAVAPAPAAPIAVTPVAP
PPTLASVQPATVTIPAPAPIAAASVAPVASVAPPVVAAPTPPAASPVSTP
PVAVAQIPVAVSAPVAPPVAATPTPVAPIPVAAPVIATPPVAASAPTPAA
VTPVVSPVIATPPVVPANTTVPVAAPVAAVPAAVPVVAPVLAPAVAPAVA
PVVAETPAPPPVAEIPVATIPECVAPLIPEVSVVATKPLAAAEPVVVAPP
ATETPVVAPAAASPHVSVAPAVETAVVAPVSASTEPPVAAATLTTAPETP
ALAPVVAESQVAANTVVATPPTPAPEPETIAPPVVAETPEVASVAVAETT
PPVVPPVAAESIPAPVVATTPVPATLAVTDPDVTASAVPELPPVIAPSPV
PSAVAETPVDLAPPVLPPVAAEPVPAVVAEETPETPAPASAPVTIAALDI
PEVAPVIAAPSDAPAEAPSAAAPIVSTPPTTASVPETTAPPAAVPTEPID
VSVLSEAAIETPVAPPVEVTTEVAVADVAPPEAAADLIIEPVEPPAPIPD
LLEQTTSVPAVEAAESTSSPIPETSLPPPNEAVASPEVAVAPITAPEPIP
EPEPSLATPTEPIPVEAPVVIQEAVDAVEVPVTETSTSIPETTVEYPVAE
KVLDPAITEAPVTTQEPDVANINDGAPATEITTPAVEIVTAAAEVSDTAI
PLIDPPVPQEIAVAEIPETETKPAEVIVEQSTIPIEAPVPEVSKYAEPVI
SEAPAAEVPITAGDNPDNTSVGISEVVPTIAEKAVEEVPTSEIPEQSSSP
SDSVPVAKITPLLRDLQTTDVSLLAIAATLDAIGEKLKDQKARNQQVMDR
LCEIEKILGPPKSNASFLDH
BO25903.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:35:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpn-PB | 864 | CG4795-PB | 1..864 | 1..864 | 4278 | 100 | Plus |
| Cpn-PA | 842 | CG4795-PA | 1..842 | 1..864 | 4135 | 97.5 | Plus |
| CG11584-PB | 662 | CG11584-PB | 28..627 | 7..635 | 401 | 28.1 | Plus |
| CG11584-PB | 662 | CG11584-PB | 86..641 | 3..600 | 398 | 28.9 | Plus |
| CG13731-PB | 792 | CG13731-PB | 45..751 | 42..748 | 379 | 24 | Plus |
| dp-PY | 18095 | CG33196-PY | 14005..14695 | 7..687 | 376 | 25.7 | Plus |
| CG13731-PB | 792 | CG13731-PB | 137..785 | 3..648 | 375 | 27.2 | Plus |
| CG13731-PB | 792 | CG13731-PB | 59..758 | 3..648 | 374 | 25.3 | Plus |
| CG11584-PB | 662 | CG11584-PB | 84..648 | 170..755 | 362 | 27.1 | Plus |
| CG11584-PB | 662 | CG11584-PB | 178..655 | 8..524 | 338 | 29.9 | Plus |
| CG13731-PB | 792 | CG13731-PB | 217..789 | 3..614 | 337 | 24.8 | Plus |
| CG13731-PB | 792 | CG13731-PB | 7..674 | 70..804 | 327 | 25.2 | Plus |
| CG11584-PB | 662 | CG11584-PB | 9..564 | 239..800 | 295 | 24.9 | Plus |
| CG11584-PB | 662 | CG11584-PB | 277..647 | 2..381 | 280 | 29.8 | Plus |
| CG11584-PB | 662 | CG11584-PB | 68..476 | 418..810 | 247 | 25.4 | Plus |
