BO25909.complete Sequence
1315 bp assembled on 2010-06-29
GenBank Submission: KX796743
> BO25909.complete
GAAGTTATCAGTCGACATGAGGCAACTATTCAGACGCTTGATGAACCACC
AGTATTTGACGCAGGACCAGATCAATGGGTTCGACAACTACAAGTACAGT
GCCATTGATACCTCACCGCTGAGTCAGTATGTGATGCATCCCTTTTGGGA
TTGGCTAGTTAAGTTCTTTCCGCGCTGGTTTGCGCCCAACCTGATGACCT
TTCTGGGCTTCCTGTTCAGCGCCATGAACCTGGTGCTGCTCTCCTACTAC
GACTGGAACTTTGATGCGAGTTCCGGCGAGGAGGGCACCACCCCCATTCC
GTCGTGGGTCTGGCTCTGCACGGCCATCAACATCTTTTTAGCCTACACCC
TGGACGGGATCGATGGCAAGCAGGCCCGCCGCATTGGATTATCTGGTCCG
CTGGGCGAGCTCTTCGATCACGGTTTGGATTCATATACCGCCATGTTGAT
CCCGACGTGCCTGTACAGCATTTTTGGACGCAGTCGCGTGTATTCGGTGC
GACCCATGAGGATGTACTACGTATGCCTAACGGTCTACTTCAACTTCTTC
ATTTCGCACTGGGAGAAGTACAACACGGGCATCCTCTATCTGCCCTGGGG
CTATGACCTCAGCATGTGGGGGAGCACCGCCATGTACCTGGTCACCTGGT
GGATGGGCTTCGAGCGCTGGAAGTTCGAACTGCCGCTGGGATCCTACGGA
ACCCTACCATTGGGCAATGTCATGGAGGCAGTGCTGCATGTCAGTGCTAT
GGCGAATCTTCCACTAGTCATAATTAATGTCTACAACTCTTATGCGCATC
GCACAGGTCGTCTGTTGTCCTTTTGGGAGGCCGTTCGGCCCATGTGGCCC
TTCATCACCTACTTCGTCATACTGCTCGCCTGGCCATATGTATCGCCGAA
CGACATCATGGAAAAGGATCCACGCGCTATTTTCATGCTTAGCGGCACAA
TCTTTTCCAACGTCAGCTGTCGTTTAATTGTCTCCCAGATGTCCGTGACG
AGATGCGAGGCCTGGCATTGGCAGACGCCTATGTTTATCCTTTCCTTCTT
GACGAGCCTGTGGATTCCGCTACTGGAGAGGCCGTTGCTATACTTGCTTC
TAATTGTGACCACGCTGAGCCACTGGCAATACGGGGCCAGCGTGGTAAAC
CAGATGTGCGAGCATTTCAACCGGGTCTGCTTCACGGTCCATAAGCGAGT
GCCGCAGGAGGAGCTCCCCAAGAAGAAGACTCTGCTGGCAGAGGAAATCA
GCCAGGCAGATAAGCCACAAGCGGAGGAGCCATTGAAGAAAGATATAGCA
AGCTTTCTAGACCAT
BO25909.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:32:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33116-RA | 1284 | CG33116-PA | 1..1281 | 17..1297 | 6405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:32:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33116-RA | 2512 | CG33116-RA | 331..1611 | 17..1297 | 6405 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:32:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19534301..19534925 | 162..786 | 3125 | 100 | Plus |
| 2L | 23513712 | 2L | 19536133..19536462 | 968..1297 | 1650 | 100 | Plus |
| U | 3151297 | U | 2744410..2744695 | 162..447 | 1430 | 100 | Plus |
| 2L | 23513712 | 2L | 19534979..19535159 | 787..967 | 905 | 100 | Plus |
| 2L | 23513712 | 2L | 19533809..19533886 | 17..94 | 390 | 100 | Plus |
| 2L | 23513712 | 2L | 19534148..19534218 | 93..163 | 355 | 100 | Plus |
| U | 3151297 | U | 2744257..2744327 | 93..163 | 355 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:32:09 has no hits.
BO25909.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-29 17:44:13 Download gff for
BO25909.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33116-RA | 337..1617 | 17..1299 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:01:57 Download gff for
BO25909.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33116-RA | 331..1611 | 17..1299 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:43:33 Download gff for
BO25909.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33116-RA | 331..1611 | 17..1299 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:43:33 Download gff for
BO25909.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19533809..19533886 | 17..94 | 100 | -> | Plus |
| 2L | 19534150..19534218 | 95..163 | 100 | -> | Plus |
| 2L | 19534303..19534925 | 164..786 | 100 | -> | Plus |
| 2L | 19534979..19535159 | 787..967 | 100 | -> | Plus |
| 2L | 19536133..19536462 | 968..1299 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:01:57 Download gff for
BO25909.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19534979..19535159 | 787..967 | 100 | -> | Plus |
| arm_2L | 19533809..19533886 | 17..94 | 100 | -> | Plus |
| arm_2L | 19534150..19534218 | 95..163 | 100 | -> | Plus |
| arm_2L | 19534303..19534925 | 164..786 | 100 | -> | Plus |
| arm_2L | 19536133..19536462 | 968..1299 | 99 | | Plus |
BO25909.pep Sequence
Translation from 16 to 1315
> BO25909.pep
MRQLFRRLMNHQYLTQDQINGFDNYKYSAIDTSPLSQYVMHPFWDWLVKF
FPRWFAPNLMTFLGFLFSAMNLVLLSYYDWNFDASSGEEGTTPIPSWVWL
CTAINIFLAYTLDGIDGKQARRIGLSGPLGELFDHGLDSYTAMLIPTCLY
SIFGRSRVYSVRPMRMYYVCLTVYFNFFISHWEKYNTGILYLPWGYDLSM
WGSTAMYLVTWWMGFERWKFELPLGSYGTLPLGNVMEAVLHVSAMANLPL
VIINVYNSYAHRTGRLLSFWEAVRPMWPFITYFVILLAWPYVSPNDIMEK
DPRAIFMLSGTIFSNVSCRLIVSQMSVTRCEAWHWQTPMFILSFLTSLWI
PLLERPLLYLLLIVTTLSHWQYGASVVNQMCEHFNRVCFTVHKRVPQEEL
PKKKTLLAEEISQADKPQAEEPLKKDIASFLDH
BO25909.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:22:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33116-PA | 427 | CG33116-PA | 1..427 | 1..427 | 2330 | 100 | Plus |
| CG7149-PC | 415 | CG7149-PC | 5..393 | 12..397 | 1012 | 48.1 | Plus |
| CG7149-PA | 415 | CG7149-PA | 5..393 | 12..397 | 1012 | 48.1 | Plus |
| CG7149-PB | 414 | CG7149-PB | 5..398 | 12..400 | 1011 | 47.8 | Plus |
| bbc-PB | 417 | CG6016-PB | 12..375 | 14..391 | 343 | 26.4 | Plus |
