Clone BO25920 Report

Search the DGRC for BO25920

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:259
Well:20
Vector:pDNR-Dual
Associated Gene/TranscriptCG12511-RC
Protein status:BO25920.pep: Imported from assembly
Sequenced Size:397

Clone Sequence Records

BO25920.complete Sequence

397 bp assembled on 2010-06-29

GenBank Submission: KX800128

> BO25920.complete
GAAGTTATCAGTCGACATGAATAGCCTTAGCCAGAGGTCGCCGTACAGCC
AGATCGGGATGGGAGCTGCCGGTGGTTTTCTCACCGGCTTCGTGCTCCTC
AAGGCGAGTAAGATTATGGCCGTGGCCGCTGGCGGTACCATTCTGGCGCT
CGAGCTGGCATGGCAGGCGGGACTGGTCCAGCTGGATGTGCTCAAGACAT
TCTCACAGCTGGAACAGGATCAGTCCCGGGGGCAGCTAGAGGTCAGAGAA
ATATCCCTGGAGCCAGTGAATCTTAACCGCGTTCAGGAACTTGGGGATAA
AGCCAGGAAGGCGTGTGCAACCAGCGGTCGTCTATGTGTGGCCTTCTTGG
GCGGCTTTCTACTCGGCTTTGGATGGGCTGCAAGCTTTCTAGACCAT

BO25920.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:38:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG12511-RB 396 CG12511-PB 30..393 16..379 1820 100 Plus
CG12511-RD 366 CG12511-PD 1..363 17..379 1815 100 Plus
CG12511-RC 366 CG12511-PC 1..363 17..379 1815 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:38:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG12511-RB 585 CG12511-RB 146..509 16..379 1820 100 Plus
CG12511-RD 918 CG12511-RD 203..566 16..379 1820 100 Plus
CG12511-RC 589 CG12511-RC 150..513 16..379 1820 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:38:39
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5678784..5679147 16..379 1820 100 Plus
Blast to na_te.dros performed on 2014-11-26 14:38:40 has no hits.

BO25920.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-29 17:46:34 Download gff for BO25920.complete
Subject Subject Range Query Range Percent Splice Strand
CG12511-RA 1..363 17..381 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:39:23 Download gff for BO25920.complete
Subject Subject Range Query Range Percent Splice Strand
CG12511-RC 151..513 17..381 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:57:15 Download gff for BO25920.complete
Subject Subject Range Query Range Percent Splice Strand
CG12511-RC 151..513 17..381 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:57:15 Download gff for BO25920.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5678785..5679147 17..381 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:39:23 Download gff for BO25920.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5678785..5679147 17..381 99   Plus

BO25920.pep Sequence

Translation from 16 to 397

> BO25920.pep
MNSLSQRSPYSQIGMGAAGGFLTGFVLLKASKIMAVAAGGTILALELAWQ
AGLVQLDVLKTFSQLEQDQSRGQLEVREISLEPVNLNRVQELGDKARKAC
ATSGRLCVAFLGGFLLGFGWAASFLDH

BO25920.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:12:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG12511-PD 121 CG12511-PD 1..121 1..121 604 100 Plus
CG12511-PC 121 CG12511-PC 1..121 1..121 604 100 Plus
CG12511-PB 131 CG12511-PB 11..131 1..121 604 100 Plus