Clone BO25921 Report

Search the DGRC for BO25921

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:259
Well:21
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO25921.pep: Imported from assembly
Sequenced Size:475

Clone Sequence Records

BO25921.complete Sequence

475 bp assembled on 2010-06-29

> BO25921.complete
GAAGTTATCAGTCGACATGAAGTGGCTTGTGTTATTTGTAATAACCCTTG
GCTTAGGATTAGCCACACCCAATTCGACCTACAATCATTATCGCCTGCCG
ACGGCACTTCGACCTATCAAGTATGACCTGCACGTGCTAACCCAGCTGGA
ATATGCTGATGATTTTAGTTTTAACGGAAGTGTGAAAATCCAAATCCAAG
TCTTGGAAAACACCAACAACATAACTTTGCATTCGAAGGAACTGACGATC
GATGAGACGGCAACCACTCTTCGCCAAATTACCGGAGAGGATCTAAAGAA
TAACTGCGTGTCCTCCACAGAGACCGATTGCGGGGATACTACCGCAGCTC
CTACGTGGATCCTGTGGCCAATGAGACCAGGTGTGGACTGGCGATTACTC
GAAGAAGAAAACAGATATTTAATCCTTGTATGTTCACCGGACTTAGCAAT
ATGCCCGGCAAGCTTTCTAGACCAT

BO25921.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:38:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG31427-RF 876 CG31427-PF 1..306 17..322 1530 100 Plus
CG31427-RE 750 CG31427-PE 1..306 17..322 1530 100 Plus
CG31427-RD 750 CG31427-PD 1..306 17..322 1530 100 Plus
CG31427-RF 876 CG31427-PF 405..541 321..457 685 100 Plus
CG31427-RE 750 CG31427-PE 405..541 321..457 685 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:38:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG31427-RF 1127 CG31427-RF 101..406 17..322 1530 100 Plus
CG31427-RE 1076 CG31427-RE 101..406 17..322 1530 100 Plus
CG31427-RD 1152 CG31427-RD 71..376 17..322 1530 100 Plus
CG31427-RF 1127 CG31427-RF 505..641 321..457 685 100 Plus
CG31427-RE 1076 CG31427-RE 505..641 321..457 685 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:38:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29239662..29239967 322..17 1530 100 Minus
3R 32079331 3R 29239427..29239563 457..321 685 100 Minus
3R 32079331 3R 29237857..29237998 288..147 290 80.3 Minus
Blast to na_te.dros performed on 2014-11-26 14:38:35 has no hits.

BO25921.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-29 17:46:30 Download gff for BO25921.complete
Subject Subject Range Query Range Percent Splice Strand
CG31427-RB 101..541 17..459 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:39:22 Download gff for BO25921.complete
Subject Subject Range Query Range Percent Splice Strand
CG31427-RD 71..376 17..322 100 -> Plus
CG31427-RD 477..611 323..459 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:57:13 Download gff for BO25921.complete
Subject Subject Range Query Range Percent Splice Strand
CG31427-RD 71..376 17..322 100 -> Plus
CG31427-RD 477..611 323..459 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:57:13 Download gff for BO25921.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29239424..29239561 323..459 98 <- Minus
3R 29239662..29239967 17..322 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:39:22 Download gff for BO25921.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25065146..25065283 323..459 98 <- Minus
arm_3R 25065384..25065689 17..322 100   Minus

BO25921.pep Sequence

Translation from 16 to 475

> BO25921.pep
MKWLVLFVITLGLGLATPNSTYNHYRLPTALRPIKYDLHVLTQLEYADDF
SFNGSVKIQIQVLENTNNITLHSKELTIDETATTLRQITGEDLKNNCVSS
TETDCGDTTAAPTWILWPMRPGVDWRLLEEENRYLILVCSPDLAICPASF
LDH

BO25921.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:20:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG31427-PE 249 CG31427-PE 1..104 1..104 526 98.1 Plus
CG31427-PD 249 CG31427-PD 1..104 1..104 526 98.1 Plus
CG31427-PC 249 CG31427-PC 1..104 1..104 526 98.1 Plus
CG31427-PF 291 CG31427-PF 1..104 1..104 526 98.1 Plus
CG11951-PB 493 CG11951-PB 1..101 1..101 328 62.4 Plus