Clone BO25924 Report

Search the DGRC for BO25924

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:259
Well:24
Vector:pDNR-Dual
Associated Gene/TranscriptCG12516-RB
Protein status:BO25924.pep: Imported from assembly
Sequenced Size:934

Clone Sequence Records

BO25924.complete Sequence

934 bp assembled on 2010-06-29

GenBank Submission: KX795316

> BO25924.complete
GAAGTTATCAGTCGACATGATCAGCCCGGTAATAACTCGACAAATGGTGC
AAATCCTGCCAAGTGTTATGGTCGGTAGGATAACACTTCCCGATATTATT
GAGGATGCAATCAAGCCCCCAACGGAAGATATTAATTTCGAAGAAAAATC
GAATGAGAATGAGGTGGAAGATAATACAGAGAAATCGGAAGCGGTTTCTG
AATCCGAAAAAGAGGTAATTGAGGTATCTGAGGAGCCGAAGGAAGAAGAG
GTAAAGTACGCTTGGAATGCACCCTGCATGATGGTCATCTTCGAGGATGG
CGATGTCAATTGTGCCCTGCATCACCTGGTCGAATCTCTACAGGATCCCT
TTGCCTTAGATGCGGTTGCCGTGATCTTGGTACAAGAAGCTTTAGCCGAA
GAAATCGAAAACCGAGTAAAAATTCTGATGAAACCCTTGGATGCCAGGGT
GGCCAATCATCCGTGCTACAAGCGCACTCTGATGAAGATTGACGAACTTA
GGCCGAAAACTATAATAGGTCCTTCAGATCGTGTCTTACCCGATGCCACG
CCCATAATGGTGCGGGACATACCACACAAATTTCTGGGCGATGGACCCAC
TGGCATTATAACCATGCATATTTTTCGCACCCCTTTCGAAGCCACTCAGA
TATATAGAAAGGAATATCCCCTACCAATCGCATCGGTTAGTATATGGAAT
GAGCGGGTTTCGAGTGTTTACGATGTAATTGGCATGATGAATCTACTCGA
TACCTTTAAGATCAACTGTTTCACGGTCGATATGGAGCCCATTAAGCGGG
CATTCGAGCTAAGGAAGTATAGTGCTTGTATACATCGTGGTTATCACTAT
GAAACCCTGCCCATAAATGGCGAGAGAAAGATTATCATATATCCAGTTGG
AACTATATTTGGCAATGCAAGCTTTCTAGACCAT

BO25924.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:30:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG12516-RB 903 CG12516-PB 1..900 17..916 4500 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:30:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG12516-RB 975 CG12516-RB 39..938 17..916 4500 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:30:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 28303668..28304567 916..17 4500 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:30:39 has no hits.

BO25924.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-29 17:44:10 Download gff for BO25924.complete
Subject Subject Range Query Range Percent Splice Strand
CG12516-RA 1..873 44..918 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:01:40 Download gff for BO25924.complete
Subject Subject Range Query Range Percent Splice Strand
CG12516-RB 39..938 17..918 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:42:58 Download gff for BO25924.complete
Subject Subject Range Query Range Percent Splice Strand
CG12516-RB 39..938 17..918 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:42:58 Download gff for BO25924.complete
Subject Subject Range Query Range Percent Splice Strand
3R 28303665..28304567 17..918 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:01:40 Download gff for BO25924.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24129387..24130289 17..918 99   Minus

BO25924.pep Sequence

Translation from 16 to 934

> BO25924.pep
MISPVITRQMVQILPSVMVGRITLPDIIEDAIKPPTEDINFEEKSNENEV
EDNTEKSEAVSESEKEVIEVSEEPKEEEVKYAWNAPCMMVIFEDGDVNCA
LHHLVESLQDPFALDAVAVILVQEALAEEIENRVKILMKPLDARVANHPC
YKRTLMKIDELRPKTIIGPSDRVLPDATPIMVRDIPHKFLGDGPTGIITM
HIFRTPFEATQIYRKEYPLPIASVSIWNERVSSVYDVIGMMNLLDTFKIN
CFTVDMEPIKRAFELRKYSACIHRGYHYETLPINGERKIIIYPVGTIFGN
ASFLDH

BO25924.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:22:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG12516-PB 300 CG12516-PB 1..300 1..300 1558 100 Plus
CG2336-PA 322 CG2336-PA 45..311 30..298 559 41.3 Plus
CG15717-PE 252 CG15717-PE 22..252 73..300 500 41.3 Plus
CG15717-PC 252 CG15717-PC 22..252 73..300 500 41.3 Plus
CG15717-PA 252 CG15717-PA 22..252 73..300 500 41.3 Plus