Clone BO25926 Report

Search the DGRC for BO25926

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:259
Well:26
Vector:pDNR-Dual
Associated Gene/TranscriptCG16790-RA
Protein status:BO25926.pep: Imported from assembly
Sequenced Size:808

Clone Sequence Records

BO25926.complete Sequence

808 bp assembled on 2010-06-29

GenBank Submission: KX797238

> BO25926.complete
GAAGTTATCAGTCGACATGGCCCTGGTGGACTATGGTGGCAGCAGCTCCT
CCGCCTCCGAGGATGAGGACTGCACCGAAAACATTCAAACTCCCGCGTTG
ATCACCTTGAAAAGACCGGCCCTACCCAAAGCAGCCACCCTGCTGGGCCC
CAAGAAGCCCAAGCCCGAGGAGTTCGTCGAGGATGTGGTGGATGATCCCG
CGGAACATGGCGGCCGCATGCGTAGTTTCAAGCATGAACGGGGAAACTGG
GCCACTTACGTCTATGTGCCGGCAACAGCATGTGTTGACCAGCTGGAGGA
GTTCCAAACGGAGGCCATTGCTCGTCTGGAGCCACACTTGGAACTGCAGC
CGAACGAGTCGCTCCATCTGAGCCTGAGTCGAACAGTGGTGCTGCAGTAC
CATCAGATCGATGAATTCTCCCGATCCTTGCAAAGCGCCCTCAACAGCTC
TGCGGGATTCGCCGCCACTTTGCAGGGGCTGCGGATCTACACGAATGAGG
AGCGAACCAGGACCTTCATTGCTGCGCCCCTGGACGCTGCATTTGTGGAG
AAGATGACTGCCATTCTGCAGCCCATCGACCAAGTGATGCTCGACTACCG
GCTGCAACAGTTCTATGATCCGGCCTCGTTCCACGTCAGCCTTCTTTGGT
GCGTTGGCGACCAGGAGACACTGCTTAACGAAAAGCTCACGGAGTTAAAA
GAGCTCCTTGATGATCAGGACAAACTCTGCCTGGCGGTCAATGAGGTGCA
CCTAAAGTGCGGCAACAAGGATTTTACCTACTCGTTGAAAGCAAGCTTTC
TAGACCAT

BO25926.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:38:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG16790-RA 777 CG16790-PA 1..774 17..790 3870 100 Plus
CG16790-RB 159 CG16790-PB 1..159 17..195 560 88.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:38:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG16790-RA 1028 CG16790-RA 75..848 17..790 3870 100 Plus
CG16790-RB 1008 CG16790-RB 75..828 17..790 3535 97.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:38:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9569649..9569994 456..111 1730 100 Minus
3R 32079331 3R 9569254..9569588 790..456 1675 100 Minus
3R 32079331 3R 9570043..9570140 114..17 490 100 Minus
Blast to na_te.dros performed on 2014-11-26 14:38:06 has no hits.

BO25926.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-29 17:46:24 Download gff for BO25926.complete
Subject Subject Range Query Range Percent Splice Strand
CG16790-RA 1..774 17..792 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:39:08 Download gff for BO25926.complete
Subject Subject Range Query Range Percent Splice Strand
CG16790-RA 75..848 17..792 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:57:03 Download gff for BO25926.complete
Subject Subject Range Query Range Percent Splice Strand
CG16790-RA 75..848 17..792 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:57:03 Download gff for BO25926.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9569649..9569990 115..456 100 <- Minus
3R 9570043..9570140 17..114 100   Minus
3R 9569252..9569587 457..792 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:39:08 Download gff for BO25926.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5394974..5395309 457..792 99 <- Minus
arm_3R 5395371..5395712 115..456 100 <- Minus
arm_3R 5395765..5395862 17..114 100   Minus

BO25926.pep Sequence

Translation from 16 to 808

> BO25926.pep
MALVDYGGSSSSASEDEDCTENIQTPALITLKRPALPKAATLLGPKKPKP
EEFVEDVVDDPAEHGGRMRSFKHERGNWATYVYVPATACVDQLEEFQTEA
IARLEPHLELQPNESLHLSLSRTVVLQYHQIDEFSRSLQSALNSSAGFAA
TLQGLRIYTNEERTRTFIAAPLDAAFVEKMTAILQPIDQVMLDYRLQQFY
DPASFHVSLLWCVGDQETLLNEKLTELKELLDDQDKLCLAVNEVHLKCGN
KDFTYSLKASFLDH

BO25926.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:11:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG16790-PA 258 CG16790-PA 1..258 1..258 1333 100 Plus
CG16790-PB 52 CG16790-PB 1..48 1..47 170 77.1 Plus