BO25926.complete Sequence
808 bp assembled on 2010-06-29
GenBank Submission: KX797238
> BO25926.complete
GAAGTTATCAGTCGACATGGCCCTGGTGGACTATGGTGGCAGCAGCTCCT
CCGCCTCCGAGGATGAGGACTGCACCGAAAACATTCAAACTCCCGCGTTG
ATCACCTTGAAAAGACCGGCCCTACCCAAAGCAGCCACCCTGCTGGGCCC
CAAGAAGCCCAAGCCCGAGGAGTTCGTCGAGGATGTGGTGGATGATCCCG
CGGAACATGGCGGCCGCATGCGTAGTTTCAAGCATGAACGGGGAAACTGG
GCCACTTACGTCTATGTGCCGGCAACAGCATGTGTTGACCAGCTGGAGGA
GTTCCAAACGGAGGCCATTGCTCGTCTGGAGCCACACTTGGAACTGCAGC
CGAACGAGTCGCTCCATCTGAGCCTGAGTCGAACAGTGGTGCTGCAGTAC
CATCAGATCGATGAATTCTCCCGATCCTTGCAAAGCGCCCTCAACAGCTC
TGCGGGATTCGCCGCCACTTTGCAGGGGCTGCGGATCTACACGAATGAGG
AGCGAACCAGGACCTTCATTGCTGCGCCCCTGGACGCTGCATTTGTGGAG
AAGATGACTGCCATTCTGCAGCCCATCGACCAAGTGATGCTCGACTACCG
GCTGCAACAGTTCTATGATCCGGCCTCGTTCCACGTCAGCCTTCTTTGGT
GCGTTGGCGACCAGGAGACACTGCTTAACGAAAAGCTCACGGAGTTAAAA
GAGCTCCTTGATGATCAGGACAAACTCTGCCTGGCGGTCAATGAGGTGCA
CCTAAAGTGCGGCAACAAGGATTTTACCTACTCGTTGAAAGCAAGCTTTC
TAGACCAT
BO25926.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:38:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16790-RA | 777 | CG16790-PA | 1..774 | 17..790 | 3870 | 100 | Plus |
CG16790-RB | 159 | CG16790-PB | 1..159 | 17..195 | 560 | 88.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:38:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16790-RA | 1028 | CG16790-RA | 75..848 | 17..790 | 3870 | 100 | Plus |
CG16790-RB | 1008 | CG16790-RB | 75..828 | 17..790 | 3535 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:38:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9569649..9569994 | 456..111 | 1730 | 100 | Minus |
3R | 32079331 | 3R | 9569254..9569588 | 790..456 | 1675 | 100 | Minus |
3R | 32079331 | 3R | 9570043..9570140 | 114..17 | 490 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:38:06 has no hits.
BO25926.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-29 17:46:24 Download gff for
BO25926.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16790-RA | 1..774 | 17..792 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:39:08 Download gff for
BO25926.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16790-RA | 75..848 | 17..792 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:57:03 Download gff for
BO25926.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16790-RA | 75..848 | 17..792 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:57:03 Download gff for
BO25926.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9569649..9569990 | 115..456 | 100 | <- | Minus |
3R | 9570043..9570140 | 17..114 | 100 | | Minus |
3R | 9569252..9569587 | 457..792 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:39:08 Download gff for
BO25926.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5394974..5395309 | 457..792 | 99 | <- | Minus |
arm_3R | 5395371..5395712 | 115..456 | 100 | <- | Minus |
arm_3R | 5395765..5395862 | 17..114 | 100 | | Minus |
BO25926.pep Sequence
Translation from 16 to 808
> BO25926.pep
MALVDYGGSSSSASEDEDCTENIQTPALITLKRPALPKAATLLGPKKPKP
EEFVEDVVDDPAEHGGRMRSFKHERGNWATYVYVPATACVDQLEEFQTEA
IARLEPHLELQPNESLHLSLSRTVVLQYHQIDEFSRSLQSALNSSAGFAA
TLQGLRIYTNEERTRTFIAAPLDAAFVEKMTAILQPIDQVMLDYRLQQFY
DPASFHVSLLWCVGDQETLLNEKLTELKELLDDQDKLCLAVNEVHLKCGN
KDFTYSLKASFLDH
BO25926.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:11:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16790-PA | 258 | CG16790-PA | 1..258 | 1..258 | 1333 | 100 | Plus |
CG16790-PB | 52 | CG16790-PB | 1..48 | 1..47 | 170 | 77.1 | Plus |