Clone BO25929 Report

Search the DGRC for BO25929

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:259
Well:29
Vector:pDNR-Dual
Associated Gene/TranscriptCG3330-RA
Protein status:BO25929.pep: Imported from assembly
Sequenced Size:898

Clone Sequence Records

BO25929.complete Sequence

898 bp assembled on 2010-06-29

GenBank Submission: KX795020

> BO25929.complete
GAAGTTATCAGTCGACATGATAGGCATTCAAAAAAAGCGACCAGCCGCCG
GAGAGTACGTAGTGCCAAACAATTCGGCTCTAAATCTGCAGAATAAGCCC
AGTATATACGATCAAACGCCCAACCAAATGGAGAAGACCACCAAGTGCCG
CTATTGTGAGAACATGGCCAAGAACTTTCTGTACCTGGAGAGCCTGATCC
GGAACAACAAGGATAACGACAAGAACAACAAGTGCAGCTTGTGCAACTCG
TCGCTAAAGTACTTGGAGTATGTTAACCGCAATATTCGCCAGGTTTTCGG
CAACTTCGATTCAATTGTCCAGGCGGATCGTGCTCTGCAATCCAAGCCGG
CCATGATGCCCAAATACTCGGTGGGCCCGGCTCCGGAAAAAGCTGATCTG
CGCTCCAAGGGTGGCGCCATTGTCTCCCAGCAAAGGTCGGCAAAAAGCCT
CAAGTCCAAGAGCCTAAAATCCCTTAAATCTAAGTCCAAGGAGAAGAGCC
AAAAGTCATTGAAGACGCTTAAATCGCGTAAATCTACCAAATCACTCAAG
TCCTCCAAGTCCACGAAGTCGAGCAAATCGCAGAAGTCATCCCTCAAGAA
AATTCCAACCAAACCGAAGAGCGCTAGTCCCAAGACCCAAATCAGCCATG
GCAAGATGATATTGAAGCGCAAATTCCGAAACAAGGTGGCTAGCAAGTTG
GGCGGCAACAAAGTGGTTCGCAGCGTCAGTCAGTACCGCGGCCTGGGTTC
CGCCCGCTCCAAACTCTCGAAGGGATCTAGTCACAAGAAGCTGATCAAGC
AGCGGTCCGCCGCTCCACCGACCAGCATCAACTGGCAGCTCCTCAAAAGA
AACCTGCCCAAGCGGCCCAATCCAGTGAAGGCAAGCTTTCTAGACCAT

BO25929.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:37:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG3330-RA 867 CG3330-PA 1..864 17..880 4320 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:37:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG3330-RA 1190 CG3330-RA 202..1065 17..880 4320 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:37:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27329818..27330681 880..17 4320 100 Minus
Blast to na_te.dros performed on 2014-11-26 14:37:51 has no hits.

BO25929.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-29 17:46:21 Download gff for BO25929.complete
Subject Subject Range Query Range Percent Splice Strand
CG3330-RA 202..1065 17..882 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:39:03 Download gff for BO25929.complete
Subject Subject Range Query Range Percent Splice Strand
CG3330-RA 202..1065 17..882 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:56:59 Download gff for BO25929.complete
Subject Subject Range Query Range Percent Splice Strand
CG3330-RA 202..1065 17..882 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:56:59 Download gff for BO25929.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27329816..27330681 17..882 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:39:03 Download gff for BO25929.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23155538..23156403 17..882 99   Minus

BO25929.pep Sequence

Translation from 16 to 898

> BO25929.pep
MIGIQKKRPAAGEYVVPNNSALNLQNKPSIYDQTPNQMEKTTKCRYCENM
AKNFLYLESLIRNNKDNDKNNKCSLCNSSLKYLEYVNRNIRQVFGNFDSI
VQADRALQSKPAMMPKYSVGPAPEKADLRSKGGAIVSQQRSAKSLKSKSL
KSLKSKSKEKSQKSLKTLKSRKSTKSLKSSKSTKSSKSQKSSLKKIPTKP
KSASPKTQISHGKMILKRKFRNKVASKLGGNKVVRSVSQYRGLGSARSKL
SKGSSHKKLIKQRSAAPPTSINWQLLKRNLPKRPNPVKASFLDH

BO25929.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:11:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG3330-PA 288 CG3330-PA 1..288 1..288 1450 100 Plus