BO25930.complete Sequence
658 bp assembled on 2010-06-29
GenBank Submission: KX798822
> BO25930.complete
GAAGTTATCAGTCGACATGGAGGACCATAATACAGCCAACCTGTCGGAGC
CAGCATCTCCAGCTAATTCTGTGGCATCCGCAGAAATTGCCGCCGAGTTC
GCTGCGCTTTCCGTCGAGGAGAAGGAGCAGCGTCGGGCTGAGTGGAGTCA
GGAGCTCGCCCGCGTTGAGGAAGAGATCAATACGCTGCGAACTGTCCTAG
CCTCCAAGACGCGCCATGCCTCCGATCTCAAGCGCAAGCTGGGCATCACC
GTCTGGAAGGAGGTGACGGACGACGTGAACCAGGGCCTTAAGAACCTCAA
GGAGAGCACTGTTTACCAATCGGTGGAGCAGAGCGTGGGCACGTTTACTA
AAACGGTGTACGAGGCACCACTATACCAACGCACTGAGTCGGTGCTAAAG
TCCACGGGCGAGAAGACCGCCTCGGTGTTTGGCAGCATCACCAGTGGCAT
TTCGTCGAAACTGTCGCAAATGAAAAACTCCGAATCGATGCGTTCTATCG
AGGCTTCGGTGGGCTCTGCCTACGAGAACGTTAAAACCAAGGTGACATCC
CGCTCGGGTTCGGTGTCCAGTTTCCCAGATGCCCTGGACGAGAATAACAC
ATCCTCGGGTCTGAATTCACCCACAGACTCACTCCCGAAAGCAAGCTTTC
TAGACCAT
BO25930.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:37:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5174-RA | 627 | CG5174-PA | 1..624 | 17..640 | 3120 | 100 | Plus |
| CG5174-RL | 630 | CG5174-PL | 14..627 | 27..640 | 3070 | 100 | Plus |
| CG5174-RB | 1068 | CG5174-PB | 452..1065 | 27..640 | 3070 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:37:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5174-RA | 1532 | CG5174-RA | 132..755 | 17..640 | 3120 | 100 | Plus |
| CG5174-RL | 981 | CG5174-RL | 145..758 | 27..640 | 3070 | 100 | Plus |
| CG5174-RB | 2195 | CG5174-RB | 805..1418 | 27..640 | 3070 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:37:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18424323..18424486 | 149..312 | 820 | 100 | Plus |
| 2R | 25286936 | 2R | 18424872..18425034 | 373..535 | 815 | 100 | Plus |
| 2R | 25286936 | 2R | 18424127..18424252 | 27..152 | 630 | 100 | Plus |
| 2R | 25286936 | 2R | 18425340..18425444 | 536..640 | 525 | 100 | Plus |
| 2R | 25286936 | 2R | 18424607..18424666 | 313..372 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:37:38 has no hits.
BO25930.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-29 17:46:20 Download gff for
BO25930.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5174-RA | 135..758 | 17..642 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:38:58 Download gff for
BO25930.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5174-RA | 132..755 | 17..642 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:56:55 Download gff for
BO25930.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5174-RA | 132..755 | 17..642 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:56:55 Download gff for
BO25930.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18424127..18424251 | 27..151 | 100 | -> | Plus |
| 2R | 18424326..18424486 | 152..312 | 100 | -> | Plus |
| 2R | 18424607..18424666 | 313..372 | 100 | -> | Plus |
| 2R | 18424872..18425034 | 373..535 | 100 | -> | Plus |
| 2R | 18425340..18425444 | 536..642 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:38:58 Download gff for
BO25930.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14311632..14311756 | 27..151 | 100 | -> | Plus |
| arm_2R | 14311831..14311991 | 152..312 | 100 | -> | Plus |
| arm_2R | 14312112..14312171 | 313..372 | 100 | -> | Plus |
| arm_2R | 14312377..14312539 | 373..535 | 100 | -> | Plus |
| arm_2R | 14312845..14312949 | 536..642 | 98 | | Plus |
BO25930.pep Sequence
Translation from 16 to 658
> BO25930.pep
MEDHNTANLSEPASPANSVASAEIAAEFAALSVEEKEQRRAEWSQELARV
EEEINTLRTVLASKTRHASDLKRKLGITVWKEVTDDVNQGLKNLKESTVY
QSVEQSVGTFTKTVYEAPLYQRTESVLKSTGEKTASVFGSITSGISSKLS
QMKNSESMRSIEASVGSAYENVKTKVTSRSGSVSSFPDALDENNTSSGLN
SPTDSLPKASFLDH
BO25930.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:20:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5174-PA | 208 | CG5174-PA | 1..208 | 1..208 | 1020 | 100 | Plus |
| CG5174-PL | 209 | CG5174-PL | 1..209 | 1..208 | 1002 | 99 | Plus |
| CG5174-PB | 355 | CG5174-PB | 152..355 | 5..208 | 996 | 100 | Plus |
| CG5174-PN | 222 | CG5174-PN | 1..222 | 1..208 | 995 | 93.7 | Plus |
| CG5174-PP | 365 | CG5174-PP | 148..365 | 5..208 | 971 | 93.6 | Plus |
