BO25933.complete Sequence
1468 bp assembled on 2010-06-29
GenBank Submission: KX795408
> BO25933.complete
GAAGTTATCAGTCGACATGAACTTTGAGCAGGTCAATATACCAGAGAAAC
TAGTGCCGGACAACTATTTGCAACTGGGACTGGCTGCGCAACGCAGTAAG
CAGCGCAGTTTTAAGGAGCTGCTCGAAAAGCGAAAGCTTCCGAAAAATGG
TTGGTCCGATGAACGTATCGAGGAGCTGGTGCACATGCTGGCTTCCTTGG
ACAGCAATAACTATCCACATAAGGTCGGTTTAGGAGAGCGGGAGGCGCGT
ATAGCCTGCAAACTCGTGGCTCGCCGTCACTACAACTTCGGTCATGGTAT
CGGCAGATCTGGAGACTTACTAGAGGCACAACCCAAGGCAGCTGGCTCTA
CGCTGCTCGCTCGTCTCACAAACGCCCTGATTCTGGACCTTATTCGGGGA
ATCGGACTGCCCAGCTGTGCTGGCTGCTTTTTGGTGCCAATGTGTACAGG
CATGACATTGACTTTGTGCCTGCAGAGTCTTCGCAAGCGGCGACCCGGGG
CGCGGTATGTGCTCTGGTCCCGCATCGATCAGAAGTCCTGCTTCAAGGCC
ATCACAGCAACGGGCTTGGTGCCGGTAGTCATCCCCTGCCTTATTAAAGG
AGAGTCCCTGAACACGAACGTAGATTTATTCCGAGAAAAGATAAAGTCAT
TGGGAGTGGATAGCATCCTCTGCCTGTACACTACCACCAGTTGTTTTGCT
CCACGAAACAGCGATGACATTGCCGAAGTATCCAAGTTGTCCAAACAATG
GCAGATTCCCCATCTGGTCAATAATGCCTATGGATTGCAGGCAAAGGAAA
TCGTTAATCAGTTGGAGTGCGCCAATCGAGTCGGACGCATTGATTACTTC
GTTCAGAGCAGCGACAAGAATTTGCTGGTGCCAGTGGGTAGTGCCATTGT
GGCCAGCTTCAATGAGAGTGTGCTCCACGATGTGGCCAGTACTTATGCTG
GGAGAGCTAGTGGTTCCCAGTCACTAGATGTCTTGATGACGCTACTCTCA
CTTGGGCGCAATGGCTTTCGATTGCTTTTCGATCAGCGGGGCGAGAACTT
CAATTACCTGAGAGAGAACCTTAGGAAATTTGCAGAGCCACGCGGAGAGA
TTGTTATAGACAGCAGGTTTAACTCCATATCCTTGGCCATAACATTGGCC
ACTTTGGCTGGGGATCAGATGAAGAGCATCACCAAGCTTGGCTCCATGCT
ACACATGCGTGGAGTTTCCGGAGCAAGAGTGATAGTTCCTGGCCAAAATA
AAACTATAGACGGGCATGAGTTTCTAGATTTCGGCTCCCACCGCAGCAAC
CTGCAAGTTCCGTACCTGACTGTAGCGGCAGGAATTGGAATAACCCGAGA
GGAGATTGACAAATTCTTCGACATTTTCAACAAGTGCTGGAACCAGATTT
TTCAAACTAAAAATGAAAAAATTATGAGCCTACTAGAAACAACAATCAAA
GCAAGCTTTCTAGACCAT
BO25933.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:37:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1427-RC | 1437 | CG1427-PC | 1..1434 | 17..1450 | 7170 | 100 | Plus |
| CG1427-RD | 1431 | CG1427-PD | 1..1428 | 17..1450 | 7045 | 99.6 | Plus |
| CG1427-RE | 261 | CG1427-PE | 1..245 | 17..261 | 1225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:37:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1427-RC | 1580 | CG1427-RC | 124..1557 | 17..1450 | 7170 | 100 | Plus |
| CG1427-RD | 1574 | CG1427-RD | 124..1551 | 17..1450 | 7045 | 99.6 | Plus |
| CG1427-RE | 1534 | CG1427-RE | 368..1511 | 307..1450 | 5720 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:37:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5601914..5602930 | 261..1277 | 5085 | 100 | Plus |
| 3R | 32079331 | 3R | 5602987..5603162 | 1275..1450 | 880 | 100 | Plus |
| 3R | 32079331 | 3R | 5601730..5601862 | 128..260 | 665 | 100 | Plus |
| 3R | 32079331 | 3R | 5601556..5601669 | 17..130 | 570 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:37:07 has no hits.
BO25933.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-29 17:46:18 Download gff for
BO25933.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1427-RC | 124..1557 | 17..1452 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:38:45 Download gff for
BO25933.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1427-RC | 124..1557 | 17..1452 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:56:43 Download gff for
BO25933.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1427-RC | 124..1557 | 17..1452 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:56:43 Download gff for
BO25933.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5601556..5601669 | 17..130 | 100 | -> | Plus |
| 3R | 5601733..5601862 | 131..260 | 100 | -> | Plus |
| 3R | 5601914..5602930 | 261..1277 | 100 | -> | Plus |
| 3R | 5602990..5603162 | 1278..1452 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:38:45 Download gff for
BO25933.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1427278..1427391 | 17..130 | 100 | -> | Plus |
| arm_3R | 1427455..1427584 | 131..260 | 100 | -> | Plus |
| arm_3R | 1427636..1428652 | 261..1277 | 100 | -> | Plus |
| arm_3R | 1428712..1428884 | 1278..1452 | 98 | | Plus |
BO25933.pep Sequence
Translation from 16 to 1468
> BO25933.pep
MNFEQVNIPEKLVPDNYLQLGLAAQRSKQRSFKELLEKRKLPKNGWSDER
IEELVHMLASLDSNNYPHKVGLGEREARIACKLVARRHYNFGHGIGRSGD
LLEAQPKAAGSTLLARLTNALILDLIRGIGLPSCAGCFLVPMCTGMTLTL
CLQSLRKRRPGARYVLWSRIDQKSCFKAITATGLVPVVIPCLIKGESLNT
NVDLFREKIKSLGVDSILCLYTTTSCFAPRNSDDIAEVSKLSKQWQIPHL
VNNAYGLQAKEIVNQLECANRVGRIDYFVQSSDKNLLVPVGSAIVASFNE
SVLHDVASTYAGRASGSQSLDVLMTLLSLGRNGFRLLFDQRGENFNYLRE
NLRKFAEPRGEIVIDSRFNSISLAITLATLAGDQMKSITKLGSMLHMRGV
SGARVIVPGQNKTIDGHEFLDFGSHRSNLQVPYLTVAAGIGITREEIDKF
FDIFNKCWNQIFQTKNEKIMSLLETTIKASFLDH
BO25933.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:20:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1427-PC | 478 | CG1427-PC | 1..478 | 1..478 | 2450 | 100 | Plus |
| CG1427-PD | 476 | CG1427-PD | 1..476 | 1..478 | 2427 | 99.6 | Plus |
| CG1427-PE | 86 | CG1427-PE | 1..83 | 1..83 | 424 | 98.8 | Plus |
