BO25934.complete Sequence
1666 bp assembled on 2010-06-29
GenBank Submission: KX796430
> BO25934.complete
GAAGTTATCAGTCGACATGATCGACGAACACCATCCCATGCAGATCGGAA
TGTTTCCGATGGACATAAAATGTCAACAGCAGCAACTGGGTGCTGGCCAA
CTGCCGCAAACTGGGGGCCTCAATCAACTGCTGCTGTTGAACGGAAATGA
ACGCATGTTAACAACACCAACGACAGCAGCAACATCGGTGGTGGTGGCAG
CCGGAAGGAGTGCGAGTACCAAAGCCGGAGTAGCCCACAATGACAAAATG
GCGTCAGTCAGCAGAACTGTCAACGGAAGTTGCAGTAACCACAACAGCAG
CAACAGCAGCAGCAGTAGCAGCACCAACAGCAGCAGCAACATGGCCATAA
ACAAGCAACCGATGGGCATGGGACCGGGCACAGGAACCGGAATGGGAACA
GGAACAGGACATGGTCCAGGACCACCCAACCATACACACTGCAACCGCAT
CACTTTGGGCGAGTGCAGCCTCAATGGAATGGACGGCTTTGCAACGCCGG
CAGCACCTCCATCGGCATCCAACACACCGCAAGCGCCTCTGGGAATGGCC
TCCAATTCCGGCATGGGCATGGAACTGGGCCTGGCCATGGCATCGCCGCA
GCTGAGCCAGTGCGCCCACTGCTGCCAGCCCATTTGCGATCGCTACATCA
TGCGCGTGGTGGAGAACTCCTTCCACGAGGGCTGCCTCAAGTGCACCGCC
TGCTCGCTGCACCTGGTCCACTCCTGTTATGCGAGGGAGGGCAAACTCTA
CTGCCGCGTCGACTACGAGAGACTCTACATCCGCAATCATTGCCTTGGCT
GTGGCCTTAAAATCGCCGCCGATGAGCTGGTGATGCGATGCCACGAGAAC
GTCTTCCATCTAAAGTGCTTCGCCTGTGTGGTGTGTGGAGCTCTGCTGAA
GAAGGGGGAGCAGTATGTGGTCAAACAGGGGCAGCTCTTCTGCCGCTTCG
ACTACGAGAAGGAGGTGGAGATGCTACAGGGATACGATTTCTATGGCGAT
GAGCTTTTCCCGCCCAAATTAGACGGACGAAGAGGACCCAAGCGACCGAG
AACCATTCTAAACACGCAGCAAAGACGAGCTTTTAAGGCCTCCTTCGAAG
TCTCACCGAAACCGTGTCGAAAAGTGAGAGAGAATCTGGCCAAGGATACT
GGATTAAGCCTGAGAATTGTGCAGGTTTGGTTCCAGAACCAGCGAGCCAA
GGTCAAAAAGATTCAGAAGAAGGCCAAGCAGGAGCCGCCCAGCAAAGGAG
CTAGTGACTCGCAGGACTCGCAGGAATCGCTGGACAGCAGTCTGGCCACC
AAAATCAAGGACGAGGCGCACAGCGACAGCGAATCACAGCTGGAATCGCC
GTACTCGACGACCTCCGATGGACTGACCCGGATGCGATGCACCATTAAGG
ACGAACAGGAGCAAGTGCCCTTCAACTGTATGGAGACCAATAAAGAGAAC
TGCAACAAGAACAGCGAGCCCATATTGAACACCATTCTAGGTCTGAGCTA
CGCCACCTTTCAGCAACTAATGGGTCCCTTTGCCCAGACGCCTATGATCA
ATCCGATCGACCGACTATATAGTATGCAAAGCTCCTACTTCCGGCCGGAG
GAGCTGCAATCCTACGGCGAATGCGGCGTCAAGGACTCCATGGATCACGC
AAGCTTTCTAGACCAT
BO25934.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:38:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4328-RB | 1635 | CG4328-PB | 1..1632 | 17..1648 | 8160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:38:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4328-RB | 1968 | CG4328-RB | 254..1885 | 17..1648 | 8160 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:38:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12292250..12292967 | 771..54 | 3590 | 100 | Minus |
| 3L | 28110227 | 3L | 12291300..12291579 | 1445..1166 | 1370 | 99.3 | Minus |
| 3L | 28110227 | 3L | 12291883..12292099 | 986..770 | 1085 | 100 | Minus |
| 3L | 28110227 | 3L | 12291039..12291243 | 1648..1444 | 1025 | 100 | Minus |
| 3L | 28110227 | 3L | 12291637..12291827 | 1176..986 | 955 | 100 | Minus |
| 3L | 28110227 | 3L | 12295834..12295870 | 53..17 | 185 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 14:38:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3568..3618 | 133..183 | 120 | 70.6 | Plus |
BO25934.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-29 17:46:29 Download gff for
BO25934.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4328-RA | 1..1590 | 59..1650 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:39:19 Download gff for
BO25934.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4328-RB | 254..1885 | 17..1650 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:57:12 Download gff for
BO25934.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4328-RB | 254..1885 | 17..1650 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:57:12 Download gff for
BO25934.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12291037..12291241 | 1446..1650 | 99 | <- | Minus |
| 3L | 12291300..12291570 | 1175..1445 | 100 | <- | Minus |
| 3L | 12291639..12291826 | 987..1174 | 100 | <- | Minus |
| 3L | 12291883..12292097 | 772..986 | 100 | <- | Minus |
| 3L | 12292250..12292967 | 54..771 | 100 | <- | Minus |
| 3L | 12295834..12295870 | 17..53 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:39:19 Download gff for
BO25934.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12284739..12284926 | 987..1174 | 100 | <- | Minus |
| arm_3L | 12284400..12284670 | 1175..1445 | 100 | <- | Minus |
| arm_3L | 12284137..12284341 | 1446..1650 | 99 | <- | Minus |
| arm_3L | 12284983..12285197 | 772..986 | 100 | <- | Minus |
| arm_3L | 12285350..12286067 | 54..771 | 100 | <- | Minus |
| arm_3L | 12288934..12288970 | 17..53 | 100 | | Minus |
BO25934.pep Sequence
Translation from 16 to 1666
> BO25934.pep
MIDEHHPMQIGMFPMDIKCQQQQLGAGQLPQTGGLNQLLLLNGNERMLTT
PTTAATSVVVAAGRSASTKAGVAHNDKMASVSRTVNGSCSNHNSSNSSSS
SSTNSSSNMAINKQPMGMGPGTGTGMGTGTGHGPGPPNHTHCNRITLGEC
SLNGMDGFATPAAPPSASNTPQAPLGMASNSGMGMELGLAMASPQLSQCA
HCCQPICDRYIMRVVENSFHEGCLKCTACSLHLVHSCYAREGKLYCRVDY
ERLYIRNHCLGCGLKIAADELVMRCHENVFHLKCFACVVCGALLKKGEQY
VVKQGQLFCRFDYEKEVEMLQGYDFYGDELFPPKLDGRRGPKRPRTILNT
QQRRAFKASFEVSPKPCRKVRENLAKDTGLSLRIVQVWFQNQRAKVKKIQ
KKAKQEPPSKGASDSQDSQESLDSSLATKIKDEAHSDSESQLESPYSTTS
DGLTRMRCTIKDEQEQVPFNCMETNKENCNKNSEPILNTILGLSYATFQQ
LMGPFAQTPMINPIDRLYSMQSSYFRPEELQSYGECGVKDSMDHASFLDH
BO25934.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:12:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4328-PB | 544 | CG4328-PB | 1..544 | 1..544 | 2904 | 100 | Plus |
| CG32105-PB | 640 | CG32105-PB | 154..639 | 50..528 | 675 | 36.4 | Plus |
| CG32105-PC | 639 | CG32105-PC | 154..638 | 50..528 | 672 | 36.6 | Plus |
| Lim3-PE | 405 | CG10699-PE | 4..203 | 196..403 | 425 | 39.2 | Plus |
| Lim3-PA | 440 | CG10699-PA | 39..238 | 196..403 | 425 | 39.2 | Plus |
