BO25935.complete Sequence
1093 bp assembled on 2010-06-29
GenBank Submission: KX795947
> BO25935.complete
GAAGTTATCAGTCGACATGGAAAAATATTTAACAAAAATGCCCATCAAAT
CAAAAGCAAATGAAGTTCCCAAGGAAGAGGCGGGCGTCAAAAAGGAGACT
CCCAAAGTGGCAAGGAAAGCAACAAAAAAGGATACTCCAAAAGAGTTGAA
AGATAAAGAAAATGCTGGAGATGATAATACGCCAAAGCAAACGAAAGGAA
GACCCGGTAGACCGGCTGCCAAGCGAAAAAATCTGGATACTCCAGATGTG
ACTGAGAAGTTAGCGATGGAGGAAGAAAATCCGCCCAAGCGCCGGAGTTC
CAGGCTGACCAGAAGCACTCGTTCAATGGCAGAGGATGGGTCTCCATCAC
CGGAGAAGGAAAAGCCCGAAAAGCTTCCCTTTATTAAATACAAGGGTGCT
ATAAAGTATTTCACGGAGAGCCAGGATATTGCGGCATCTGCTGACGATGT
TTTGCAATGGGTGGAAAAACAAAAAGATGAGGTAGTGCCCATGGCCTTCG
ACATGGAGTGGCCCTTCTCTTTCCAAACAGGACCTGGCAAGTCTGCCGTC
ATCCAGATATGCGTGGATGAAAAGTGCTGCTACATATACCAGCTGACTAA
TGTGAAGAAACTGCCTGCGGCCCTGGTGGCCCTTATCAATCATCCCAAAG
TGCGATTGCATGGCGTGAACATAAAGAACGATTTCCGAAAGCTGGCACGT
GATTTCCCCGAGGTTACAGCCGAACCACTGATAGAGAAATGTGTGGACTT
GGGTCTTTGGTGCAATGAGGTCTGTGAGACCGGCGGGCGCTGGAGCTTGG
AGCGATTAACCAACTTTATAGCCAAAAAGGCCATGGACAAAAGCAAGAAG
GTGCGCATGAGCAAGTGGCATGTCATTCCGCTGGACGAGAATCAACTAAT
GTACGCCGCCATCGATGTCTATATTGGTCAGGTTATCTATCGTGAATTGG
AACGCCGCGAGAAGGTCAAGATTAAAAATGAAGAAGAGTTCAAGGAAAAG
AACGGAGATGCTGCCTTTAAAGCAATGAAAGCATTGGGAGAGACATTTCT
GACCAAGATCAACGAGGTGACTCTGGCAAGCTTTCTAGACCAT
BO25935.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:38:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| WRNexo-RA | 1062 | CG7670-PA | 1..1059 | 17..1075 | 5265 | 99.8 | Plus |
| WRNexo-RB | 1065 | CG7670-PB | 1..1062 | 17..1075 | 5200 | 99.5 | Plus |
| WRNexo-RC | 1062 | CG7670-PC | 1..1059 | 17..1075 | 5120 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:38:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| WRNexo-RA | 1495 | CG7670-RA | 68..1126 | 17..1075 | 5265 | 99.8 | Plus |
| WRNexo-RB | 1498 | CG7670-RB | 68..1129 | 17..1075 | 5200 | 99.5 | Plus |
| WRNexo-RC | 1495 | CG7670-RC | 68..1126 | 17..1075 | 5120 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:38:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18364822..18365065 | 922..679 | 1190 | 99.2 | Minus |
| 3R | 32079331 | 3R | 18365121..18365345 | 678..454 | 1125 | 100 | Minus |
| 3R | 32079331 | 3R | 18365407..18365611 | 454..250 | 1025 | 100 | Minus |
| 3R | 32079331 | 3R | 18364613..18364765 | 1075..923 | 765 | 100 | Minus |
| 3R | 32079331 | 3R | 18365672..18365778 | 250..144 | 535 | 100 | Minus |
| 3R | 32079331 | 3R | 18365911..18365979 | 145..77 | 345 | 100 | Minus |
| 3R | 32079331 | 3R | 18366035..18366095 | 77..17 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:38:26 has no hits.
BO25935.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-29 17:46:28 Download gff for
BO25935.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7670-RA | 43..1101 | 17..1077 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:39:18 Download gff for
BO25935.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| WRNexo-RA | 68..1126 | 17..1077 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:57:10 Download gff for
BO25935.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| WRNexo-RA | 68..1126 | 17..1077 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:57:10 Download gff for
BO25935.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18366036..18366095 | 17..76 | 100 | | Minus |
| 3R | 18364611..18364765 | 923..1077 | 98 | <- | Minus |
| 3R | 18364822..18365065 | 679..922 | 99 | <- | Minus |
| 3R | 18365121..18365345 | 454..678 | 100 | <- | Minus |
| 3R | 18365408..18365610 | 251..453 | 100 | <- | Minus |
| 3R | 18365672..18365776 | 146..250 | 100 | <- | Minus |
| 3R | 18365911..18365979 | 77..145 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:39:18 Download gff for
BO25935.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14190333..14190487 | 923..1077 | 98 | <- | Minus |
| arm_3R | 14190544..14190787 | 679..922 | 99 | <- | Minus |
| arm_3R | 14190843..14191067 | 454..678 | 100 | <- | Minus |
| arm_3R | 14191130..14191332 | 251..453 | 100 | <- | Minus |
| arm_3R | 14191394..14191498 | 146..250 | 100 | <- | Minus |
| arm_3R | 14191633..14191701 | 77..145 | 100 | <- | Minus |
| arm_3R | 14191758..14191817 | 17..76 | 100 | | Minus |
BO25935.pep Sequence
Translation from 16 to 1093
> BO25935.pep
MEKYLTKMPIKSKANEVPKEEAGVKKETPKVARKATKKDTPKELKDKENA
GDDNTPKQTKGRPGRPAAKRKNLDTPDVTEKLAMEEENPPKRRSSRLTRS
TRSMAEDGSPSPEKEKPEKLPFIKYKGAIKYFTESQDIAASADDVLQWVE
KQKDEVVPMAFDMEWPFSFQTGPGKSAVIQICVDEKCCYIYQLTNVKKLP
AALVALINHPKVRLHGVNIKNDFRKLARDFPEVTAEPLIEKCVDLGLWCN
EVCETGGRWSLERLTNFIAKKAMDKSKKVRMSKWHVIPLDENQLMYAAID
VYIGQVIYRELERREKVKIKNEEEFKEKNGDAAFKAMKALGETFLTKINE
VTLASFLDH
BO25935.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:20:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| WRNexo-PA | 353 | CG7670-PA | 1..353 | 1..353 | 1843 | 100 | Plus |
| WRNexo-PB | 354 | CG7670-PB | 1..354 | 1..353 | 1831 | 99.7 | Plus |
| WRNexo-PC | 353 | CG7670-PC | 1..353 | 1..353 | 1814 | 99.4 | Plus |
