BO25936.complete Sequence
1153 bp assembled on 2010-06-29
GenBank Submission: KX797146
> BO25936.complete
GAAGTTATCAGTCGACATGCCACTTAAAGGCATCAGGGTACTCGAATTCG
TGGGTTTAGCACCAGGACCGTTTTGTGGGAAGATTCTAACCGACTTTGGG
GCCACAGTCACCCGCATCGACAAGGTGATGGAAAACCCTTTGGATGTACT
GCAGCAGGGAAAGCGCACACTTTGCCTGGATCTGAAGAACCCGAAAGGTC
AGCAAGCGGTGCAAAGGCTGGTCAAGAAGTGCGATGTGCTCATCGAACCT
TTTCGACCGGGAGTAATGGAGAAACTAAATCTGGGTCCCACCGACTTGTG
CACAGCCAATCCCCGCCTGATTTATGCCCGCCTCACCGGCTTTGGCCAGC
ATGGAAGACTGGCGCAACGGGCGGGACACGACATCAACTACGCGGCCTTA
TCGGGAGTACTTTCCATGCTGGGCAGGCGCCACGAAAAGGTCACTGCACC
CATTAATATTCTGGCCGATTTCGCTGGCGGCAGTTTGATGTGCGCTCTGG
GAATTTGCCTTGCCCTCTTGGAGCGCCACAGGTCGGGAAAAGGCCAAGTA
GTGGATGCCTCGATGGTCGAGGGAGCTGCCTATGTGGCCAGTTGGCTGTT
TATGTCCAGGAATCTGGTTATTTGGGGGAGGGAGCGCGGTGACAACCTCG
TCGATGGTGGATCATTCTTTTACGACACGTACGAAACCAAAGACGGTCGC
TACATGTCCGTGGGCGCCCTGGAACCGCAGTTCTTTGAGATGCTAAAACA
GCGCTTGGAACTGCCCGAAGATGTCAGTCAGTTTGGCGAGGAGCATCAGG
TTCGAGGAAGAAAGCTTTTGACTGAGGCTTTCCTCTCCAAGACCCAAGCT
GAATGGTCGCAAATATTTGAGGATGTCGACGCCTGTGTCTATCCCGTTCT
GGATTACCGCGAGGTTCACAGACACGATCACAATATACAGAGGAATTCGT
TCGAGGTGACTGAGGATACAGCGACGCCACGTCCTGCTCCAGTCCTAAGC
AGAACTCCGGGAAAGTTGCCCAAGGCAACTGATGGTGCGCAGGTGGAGTG
GATGGACGAACTAGATCTTAAGCCCGACGAGTTTAAAGATTTGCTCGACT
CGGGAGTACTTTCCCTTCCAGAGAGGGCCAAGCTGGCAAGCTTTCTAGAC
CAT
BO25936.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:38:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9319-RB | 1122 | CG9319-PB | 1..1119 | 17..1135 | 5595 | 100 | Plus |
| CG9319-RA | 1122 | CG9319-PA | 1..1119 | 17..1135 | 5595 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:38:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9319-RB | 1335 | CG9319-RB | 146..1264 | 17..1135 | 5595 | 100 | Plus |
| CG9319-RA | 1261 | CG9319-RA | 72..1190 | 17..1135 | 5595 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:38:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20751005..20752017 | 1135..123 | 5065 | 100 | Minus |
| 2L | 23513712 | 2L | 20752087..20752196 | 126..17 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:38:15 has no hits.
BO25936.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-29 17:46:26 Download gff for
BO25936.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9319-RA | 145..1263 | 17..1137 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:39:13 Download gff for
BO25936.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9319-RA | 72..1190 | 17..1137 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:57:07 Download gff for
BO25936.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9319-RA | 72..1190 | 17..1137 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:57:07 Download gff for
BO25936.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20751003..20752015 | 125..1137 | 99 | <- | Minus |
| 2L | 20752089..20752196 | 17..124 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:39:13 Download gff for
BO25936.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20751003..20752015 | 125..1137 | 99 | <- | Minus |
| arm_2L | 20752089..20752196 | 17..124 | 100 | | Minus |
BO25936.pep Sequence
Translation from 16 to 1153
> BO25936.pep
MPLKGIRVLEFVGLAPGPFCGKILTDFGATVTRIDKVMENPLDVLQQGKR
TLCLDLKNPKGQQAVQRLVKKCDVLIEPFRPGVMEKLNLGPTDLCTANPR
LIYARLTGFGQHGRLAQRAGHDINYAALSGVLSMLGRRHEKVTAPINILA
DFAGGSLMCALGICLALLERHRSGKGQVVDASMVEGAAYVASWLFMSRNL
VIWGRERGDNLVDGGSFFYDTYETKDGRYMSVGALEPQFFEMLKQRLELP
EDVSQFGEEHQVRGRKLLTEAFLSKTQAEWSQIFEDVDACVYPVLDYREV
HRHDHNIQRNSFEVTEDTATPRPAPVLSRTPGKLPKATDGAQVEWMDELD
LKPDEFKDLLDSGVLSLPERAKLASFLDH
BO25936.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:11:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9319-PB | 373 | CG9319-PB | 1..373 | 1..373 | 1951 | 100 | Plus |
| CG9319-PA | 373 | CG9319-PA | 1..373 | 1..373 | 1951 | 100 | Plus |
| CG10877-PA | 441 | CG10877-PA | 48..371 | 2..305 | 297 | 27.8 | Plus |
