Clone BO25937 Report

Search the DGRC for BO25937

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:259
Well:37
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO25937.pep: Imported from assembly
Sequenced Size:772

Clone Sequence Records

BO25937.complete Sequence

772 bp assembled on 2010-06-29

> BO25937.complete
GAAGTTATCAGTCGACATGACCACTTGTTGCCTTGGAAACGCTGAGGATA
AACGTAAACAAAAGATGATGGACTGGGCCGAAGAACTCAAGATGACCATA
AGAAAGACGACGGCCAGGAAGGGTCGGCGCTCCAAGAGTCGCGATGTTCT
GAAGGAGGAGGATGTCCAGGCGGCTGGGGGCTCCAAGGACATTTCCATCG
ACATTACGCTGAATGTCCAGGCGGGCACCCCACCGACCACCTCGGACACG
GCCACCTCGTCCACATACAACAATGAATTCGAGTCACATCGACCACCCAT
TCGTCGCATTTCAGGTGGCTGGGCGGATTCTGGACTCAAAGGATTAAAGT
CTAAGAAAAACTCCTTTGATGATGAGCGCTTTAAACAAACAAAGTCGGCT
ACAAATTCCATACCAACGGATGACATTCCCGTCATCCCAGACATGGATGA
TGTCAAGGACGAAATCATGCTCAATGAGATTGTAGAACCGCCAACTATTG
GCACCTCACGATCTGCTGTTTTGAAGGAGGCCAATTCCGATTTGCTTTCC
CAGTACGCCTTTTCAGCTGTGGATGGCTTTGATCTCTCAATCCTCACCGA
TTGCCTGGTTCCACAGGAGAGCCTCAACGAGAAGGACGATCTCTGGCAGT
GGGACAAGCTGTTCACCGAGGTCACGGCTGAAATCCATTCGGATAAAGTG
CCCAATATGGGCATGAAAATAGGACCCGATGTGATTCCACCCACACAATA
TACTGCAAGCTTTCTAGACCAT

BO25937.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:37:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG5780-RB 690 CG5780-PB 1..687 68..754 3420 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:37:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG5780-RB 881 CG5780-RB 25..763 16..754 3680 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:37:01
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12693990..12694248 754..496 1295 100 Minus
2L 23513712 2L 12694572..12694817 350..105 1230 100 Minus
2L 23513712 2L 12694304..12694426 495..373 615 100 Minus
2L 23513712 2L 12694874..12694964 106..16 455 100 Minus
Blast to na_te.dros performed on 2014-11-26 14:37:02 has no hits.

BO25937.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-29 17:46:17 Download gff for BO25937.complete
Subject Subject Range Query Range Percent Splice Strand
CG5780-RB 20..757 17..756 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:38:43 Download gff for BO25937.complete
Subject Subject Range Query Range Percent Splice Strand
CG5780-RB 26..763 17..756 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:56:42 Download gff for BO25937.complete
Subject Subject Range Query Range Percent Splice Strand
CG5780-RB 26..763 17..756 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:56:42 Download gff for BO25937.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12693988..12694248 496..756 99 <- Minus
2L 12694304..12694426 373..495 100 <- Minus
2L 12694494..12694517 349..372 95 <- Minus
2L 12694574..12694815 107..348 100 <- Minus
2L 12694874..12694963 17..106 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:38:43 Download gff for BO25937.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12693988..12694248 496..756 99 <- Minus
arm_2L 12694304..12694426 373..495 100 <- Minus
arm_2L 12694494..12694517 349..372 95 <- Minus
arm_2L 12694574..12694815 107..348 100 <- Minus
arm_2L 12694874..12694963 17..106 100   Minus

BO25937.pep Sequence

Translation from 16 to 772

> BO25937.pep
MTTCCLGNAEDKRKQKMMDWAEELKMTIRKTTARKGRRSKSRDVLKEEDV
QAAGGSKDISIDITLNVQAGTPPTTSDTATSSTYNNEFESHRPPIRRISG
GWADSGLKGLKSKKNSFDDERFKQTKSATNSIPTDDIPVIPDMDDVKDEI
MLNEIVEPPTIGTSRSAVLKEANSDLLSQYAFSAVDGFDLSILTDCLVPQ
ESLNEKDDLWQWDKLFTEVTAEIHSDKVPNMGMKIGPDVIPPTQYTASFL
DH

BO25937.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:11:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG5780-PB 229 CG5780-PB 1..229 18..246 1186 100 Plus