BO25938.complete Sequence
940 bp assembled on 2010-06-29
GenBank Submission: KX797477
> BO25938.complete
GAAGTTATCAGTCGACATGGAGCTGGAGATTTTGAACGCGAAGAACAGCA
AGCCGTACGGCAAGGTGAAGGTGCCCTCCGGCGCCACGCCCATCGGCGAT
CTGCGCGCCCTAATCCACAAGACCCTGAAGCAGACCCCACACGCGAATCG
CCAGTCGCTGCGCCTGGAACTGAAGGGCAAAAGCCTGAAGGATACGGACA
CATTGGAATCCCTGTCGCTGCGTTCCGGCGACAAGATCTATGTGAAGGAT
CTGGGTCCCCAGATTGGCTGGAAGACCGTTTTCCTGGCCGAGTACGCCGG
CCCACTGATTGTATACTTGATTTTCTACTTCCGACCGGAGTTGGTGTACG
GCAAAGCTGCCAGTCTGCCGATTTCCCTAACCACCCACATTGCCGCCGGC
TGCTATACGGTCCACTATGTGAAGCGTCTGCTGGAGACGATTTTCGTGCA
CCGCTTCTCGCACGCCACCATGCCGCTGAGGAATCTCTTCAAGAACTGCA
CATACTACTGGGGATTCACCGCCTATGTGTCCTACCACGTGAACCATCCG
CAGTTCACCTCGCCCTGCATGTGCACCGTTTGGGGAGCTCTTGGGGCATT
CGCTCTCTGCGAACTAGGAAACTTTTCGGTGCACATTGCCCTGCGCAACC
TGCGTCCGCCGGGAACAAAAGTGCGCAAGATTCCGGTGGCCGATGGAAAT
CCCCTCACCAAGCTGTTCGACTTGGTTTCTTGCCCCAACTACACCTATGA
GATCGGTGCCTGGGTTTCATTCTCTGTGCTGACTTCTTGCCTGGCTGCCT
ATCTGTTCGCCTTTGCCGGAGCCTTCCAGATGACCATTTGGGCCTTGGCC
AAGCATCGCAACTACAAAAAGGAGTTTAAGGACTACCCTCGCCAGCGCCG
CTCCATCTTCCCCTTCGTCCTGGCAAGCTTTCTAGACCAT
BO25938.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:36:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sc2-RA | 909 | CG10849-PA | 1..906 | 17..922 | 4455 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:37:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sc2-RA | 1105 | CG10849-RA | 50..955 | 17..922 | 4455 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:36:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3903541..3903911 | 17..387 | 1795 | 98.9 | Plus |
| 3L | 28110227 | 3L | 3904069..3904285 | 388..604 | 1085 | 100 | Plus |
| 3L | 28110227 | 3L | 3904684..3904885 | 721..922 | 995 | 99.5 | Plus |
| 3L | 28110227 | 3L | 3904506..3904621 | 605..720 | 580 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:36:58 has no hits.
BO25938.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-29 17:46:16 Download gff for
BO25938.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sc2-RA | 31..936 | 17..924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:38:42 Download gff for
BO25938.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sc2-RA | 50..955 | 17..924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:56:40 Download gff for
BO25938.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sc2-RA | 50..955 | 17..924 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:56:40 Download gff for
BO25938.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3903541..3903911 | 17..387 | 98 | -> | Plus |
| 3L | 3904069..3904285 | 388..604 | 100 | -> | Plus |
| 3L | 3904506..3904621 | 605..720 | 100 | -> | Plus |
| 3L | 3904684..3904885 | 721..924 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:38:42 Download gff for
BO25938.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3904506..3904621 | 605..720 | 100 | -> | Plus |
| arm_3L | 3903541..3903911 | 17..387 | 98 | -> | Plus |
| arm_3L | 3904069..3904285 | 388..604 | 100 | -> | Plus |
| arm_3L | 3904684..3904885 | 721..924 | 98 | | Plus |
BO25938.pep Sequence
Translation from 16 to 940
> BO25938.pep
MELEILNAKNSKPYGKVKVPSGATPIGDLRALIHKTLKQTPHANRQSLRL
ELKGKSLKDTDTLESLSLRSGDKIYVKDLGPQIGWKTVFLAEYAGPLIVY
LIFYFRPELVYGKAASLPISLTTHIAAGCYTVHYVKRLLETIFVHRFSHA
TMPLRNLFKNCTYYWGFTAYVSYHVNHPQFTSPCMCTVWGALGAFALCEL
GNFSVHIALRNLRPPGTKVRKIPVADGNPLTKLFDLVSCPNYTYEIGAWV
SFSVLTSCLAAYLFAFAGAFQMTIWALAKHRNYKKEFKDYPRQRRSIFPF
VLASFLDH
BO25938.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:20:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sc2-PA | 302 | CG10849-PA | 1..302 | 1..302 | 1610 | 100 | Plus |
