BO25940.complete Sequence
1315 bp assembled on 2010-06-29
GenBank Submission: KX794692
> BO25940.complete
GAAGTTATCAGTCGACATGGCTGTTTCGGCTCTCAACATGACACCCTACT
TTGGCGGATATCCCTTTCAAGGACAAGGTCGTGTCAACCAGTTGGGTGGC
GTCTTCATCAACGGCCGTCCGTTGCCCAATCACATCCGTCGCCAAATCGT
GGAGATGGCAGCAGCTGGAGTCCGTCCCTGTGTCATCTCCCGCCAGCTGC
GCGTCTCTCATGGCTGCGTCTCAAAGATTCTAAACCGCTTCCAGGAGACT
GGCTCCATTCGGCCCGGAGTAATCGGTGGCAGCAAGCCCCGTGTAGCCAC
GCCAGACATTGAGTCCAGAATCGAGGAACTTAAACAGTCGCAGCCCGGTA
TTTTTAGTTGGGAAATCCGCGCCAAGCTAATCGAAGCGGGAGTCTGCGAC
AAGCAAAATGCTCCGTCGGTGAGCTCTATTTCGCGTCTTCTGCGAGGATC
CTCCGGATCAGGGACCTCCCACAGCATCGACGGCATCCTCGGCGGAGGCG
CTGGTTCTGTGGGAAGCGAGGATGAGAGCGAGGACGATGCCGAGCCCAGT
GTGCAGTTAAAAAGGAAACAAAGGCGTTCCCGGACGACATTCTCCAACGA
CCAGATCGACGCCCTAGAGCGCATCTTCGCCCGTACACAGTACCCCGATG
TCTACACCCGGGAGGAGTTGGCCCAGAGCACGGGATTGACCGAGGCCCGT
GTCCAAGTTTGGTTCTCTAATCGCCGTGCTCGTCTGCGCAAGCAACTGAA
CACCCAGCAGGTGCCTAGCTTTGCTCCCACATCTACTTCTTTTGGCGCAA
CTCCCACTACCAGTGCCGCCCCTGCTCCAAACATGGGAATGAGCCTTTAC
AGTTCACAGAGCTGGCCATCATCCGGAGCCTATGAAAATCATGCTGCCTA
TGGTGGATCGGTTGCATCCATGTCCCCCGCCAGCAGCACCTCGGGTACCA
GCTCTGCCGCCCACAGTCCCGTACAGACGCAAGCGCAGCAGCCAGGAACT
GGAAGCGAGTTTATGACCTCCACTTACGGCGTGGGATCGAGCAATGCTAC
TTACCCATCGGCTGCCTATTCAATGCCGCAGACTCCTGCTACATCCGCGG
AGCAGCTGAGATCCCAGTTTGCATCTGCCGCCGCTTCGGGCTCTCACCAC
CCCTCCACGTGGGACAGCTACAACTTTGCGGGTTCCTTTTTCCCTCCCGC
TTCTGCCGCAGGCAACCATATTAGCGGCTACCATCATCAGGTTGATCAGA
AGAGCTCAATGATGACCACTGCACCAACCTATCCATACTTTGGATTTGCA
AGCTTTCTAGACCAT
BO25940.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:36:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gsb-RA | 1284 | CG3388-PA | 1..1281 | 17..1297 | 6405 | 100 | Plus |
| gsb-n-RA | 1350 | CG2692-PA | 46..266 | 59..279 | 460 | 80.5 | Plus |
| prd-RB | 1842 | CG6716-PB | 103..335 | 95..327 | 415 | 78.5 | Plus |
| gsb-n-RA | 1350 | CG2692-PA | 553..719 | 578..744 | 220 | 75.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:36:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gsb-RA | 1649 | CG3388-RA | 185..1465 | 17..1297 | 6405 | 100 | Plus |
| gsb-n-RA | 2237 | CG2692-RA | 369..589 | 59..279 | 460 | 80.5 | Plus |
| prd-RB | 2459 | CG6716-RB | 401..633 | 95..327 | 415 | 78.5 | Plus |
| gsb-n-RA | 2237 | CG2692-RA | 876..1042 | 578..744 | 220 | 75.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:36:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 25063228..25064459 | 66..1297 | 6145 | 99.9 | Plus |
| 2L | 23513712 | 2L | 12084821..12085053 | 327..95 | 415 | 78.5 | Minus |
| 2R | 25286936 | 2R | 25051416..25051625 | 279..70 | 405 | 79.5 | Minus |
| 2R | 25286936 | 2R | 25062148..25062203 | 17..72 | 280 | 100 | Plus |
| 2R | 25286936 | 2R | 25041692..25041858 | 744..578 | 220 | 75.4 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:36:49 has no hits.
BO25940.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-29 17:46:15 Download gff for
BO25940.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gsb-RA | 169..1449 | 17..1299 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:38:37 Download gff for
BO25940.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gsb-RA | 185..1465 | 17..1299 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:56:38 Download gff for
BO25940.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gsb-RA | 185..1465 | 17..1299 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:56:38 Download gff for
BO25940.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 25062148..25062202 | 17..71 | 100 | -> | Plus |
| 2R | 25063234..25064459 | 72..1299 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:38:37 Download gff for
BO25940.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20949671..20949725 | 17..71 | 100 | -> | Plus |
| arm_2R | 20950757..20951982 | 72..1299 | 99 | | Plus |
BO25940.pep Sequence
Translation from 16 to 1315
> BO25940.pep
MAVSALNMTPYFGGYPFQGQGRVNQLGGVFINGRPLPNHIRRQIVEMAAA
GVRPCVISRQLRVSHGCVSKILNRFQETGSIRPGVIGGSKPRVATPDIES
RIEELKQSQPGIFSWEIRAKLIEAGVCDKQNAPSVSSISRLLRGSSGSGT
SHSIDGILGGGAGSVGSEDESEDDAEPSVQLKRKQRRSRTTFSNDQIDAL
ERIFARTQYPDVYTREELAQSTGLTEARVQVWFSNRRARLRKQLNTQQVP
SFAPTSTSFGATPTTSAAPAPNMGMSLYSSQSWPSSGAYENHAAYGGSVA
SMSPASSTSGTSSAAHSPVQTQAQQPGTGSEFMTSTYGVGSSNATYPSAA
YSMPQTPATSAEQLRSQFASAAASGSHHPSTWDSYNFAGSFFPPASAAGN
HISGYHHQVDQKSSMMTTAPTYPYFGFASFLDH
BO25940.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:11:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gsb-PA | 427 | CG3388-PA | 1..427 | 1..427 | 2205 | 100 | Plus |
| gsb-n-PA | 449 | CG2692-PA | 5..310 | 4..328 | 892 | 58.3 | Plus |
| prd-PB | 613 | CG6716-PB | 5..346 | 2..313 | 859 | 55.6 | Plus |
| prd-PA | 590 | CG6716-PA | 4..323 | 19..313 | 847 | 57.5 | Plus |
| Poxm-PC | 370 | CG9610-PC | 11..162 | 21..171 | 495 | 63.8 | Plus |
