BO25941.complete Sequence
2095 bp assembled on 2010-07-15
GenBank Submission: KX796891
> BO25941.complete
GAAGTTATCAGTCGACATGGAACCGCCGTACGCCCCGCTAAGTGAGTCCT
GCGCCAAGGCGCTGGGCGACAAGGTGTACGAGAAACGTAAGCTGGCCTCG
CAGGAGATCGAGAAAATGGTCACGGAATTCAACAACAAAAACAACTCGGC
CCAGATCCGCAAGCTGATCGAGGTTCTGGCCACGGATTATGCCACATCAC
GGGACGCAAACCGAAGAAAAGGAGCGCTTATCGGTCTGGCAGCCATGGGT
TTAGGGCTGGGCAAGGATTCCGGCAAGTATGTCCAGGGCATGGTGACGCC
CATCATGACCTGCCTGTCGGATCCGGATATCCGTGTGCGGTACTTCGCCT
GCGAGTCCCTGTACAACGTGGTGAAGGTGGCCCGCTCTGCGATCATTCCC
TTCTTCCCGGAGCTTTTTGCAGCACTATCGCGTCTCGTCACTGATTCAGA
TCAAATGGTGAAGGACGGCAGCGAATTGCTGGATCGTCTTCTAAAGGACA
TTGTCACGGAATCGTCGCAAACATTCAATCTGCAGGCGTTCATTCCTTTG
CTGAGGGAGCACATCTATGTAAAGGATGCGTTTGCCCGTCAGTATGTGAT
CTCATGGATATCGATCCTAAATGCCGTACCGGATATAAACATGGTCAACT
ATTTGACCGAGATTTTGGACGGATTGTTCGTCATGCTCGAGGACAATACG
CTTGAGATCCAGCGCATGTGCGAGACCACAATCAGCCAGTTTCTGAAGTC
CATAAGGAACGACTCGTCATCCGTGCGTATGGAGGATACTATCAATACAC
TCATAACCCACGCACAATCGCCCAATGAGCTCATCAAGTCCATTGCGATC
ACCTGGATACGAGAGTTTGTCCAAATATTTGGACCCAATGTGCTGCCGTA
TGCTAGTGGCATATTTACGGCGATATTGCCGTGTCTGGAATACAATGTGG
AATCGAAGAGGAGCATTAAAGAGTGCGCCGTGTCTGTAAACAACTCGATG
ATGTTGCTCGTTTCGACCAAGGAGCTGAAAACGGAGACAGTGGCCAAGAT
TGATTTGCGTTCGATTATGGACGTTCTTTCACAGTATCTCACGCACAATT
CGATGCACACAAAGATCGCAGTACTAAAGTGGATTCACCACCTATTCACC
AACTTTCCAAACGAAATGTCCGTGCATGCGAGTAACCTGAACACTAATCT
GTTGTCAACTCTGGCCGACAACTCGGATGAGGTAGTCCTCCAAAGCCTGT
CCGTTTTGGCGGAAATCGTAAATTCTCAAGAGAGCAGGGAGCTTAACGAT
TTTAACAAATCGCACTATCGCAAGTTTTTGTTGAGCTTATTGAACCTTTT
CAGCGAGGAGAAACTTATATTGGAGAACAGAGCCAGCCTTATTATTAGAA
AACTCTGTGTGCTGCTGAATGCCGAATACATTTACCGCACTTTTGCTGAA
ATAATAGCGGAGGGCGTGCCCAACTTGAAGTTTGCTTCGACGGTTGTGCG
CCTGCTGAACATGATTCTACTTACATCAACGGAGCTATTCGAATTGCGTA
CTAGTTTGCGAAATATATCCAACGAGAAGTCAGCGGATCTCTTTCAATGT
CTCTACAAGAGCTGGGCCCACTGTCCAGTGTCTACACTTTCCTTGTGCCT
GCTCACCCAGAGCTACCAACATGTGTCCCGCTTGGTTACGCTATTTGCCG
ATGTTGAAATCACTTTGGAGCTGCTGACCGAGTTCGACAAACTGGTTCAG
TTGATAGAGTCTCCCATATTTGCTCCTTTGCGTCTTACGCTTGTTTCCAA
AGCGAATAACTGCGCGGATGCTCAGTACTTGGCTCATGCCCTGTTTGGCA
TCCTAATGCTGCTACCGCAGACGGAAGCCTTTGACACGCTTCGGAATCGT
TTGCAATGCGTGCCCAACTACTGGGGTCACGAACCTGTGGATGAACGCAA
CTCACTGGAGTACAAAAGTGGCATTGATTTCGATGCCTTGGAACAACATT
TCATTAAATTGCAGAAAGCCCATCGCGAGCAGCGTATTGTGCACCGGAAG
CGGAGTGTAATTACTCCTGAAAGCAACGCAAGCTTTCTAGACCAT
BO25941.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:15:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5608-RA | 2064 | CG5608-PA | 1..2061 | 17..2077 | 10290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:15:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5608-RA | 2244 | CG5608-RA | 82..2142 | 17..2077 | 10290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:15:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12464073..12464541 | 963..495 | 2345 | 100 | Minus |
| 3R | 32079331 | 3R | 12463695..12464021 | 1289..963 | 1635 | 100 | Minus |
| 3R | 32079331 | 3R | 12463166..12463464 | 1695..1397 | 1495 | 100 | Minus |
| 3R | 32079331 | 3R | 12462855..12463098 | 1939..1696 | 1220 | 100 | Minus |
| 3R | 32079331 | 3R | 12464606..12464839 | 497..264 | 1155 | 99.6 | Minus |
| 3R | 32079331 | 3R | 12464900..12465051 | 266..115 | 760 | 100 | Minus |
| 3R | 32079331 | 3R | 12462664..12462802 | 2077..1939 | 695 | 100 | Minus |
| 3R | 32079331 | 3R | 12463525..12463634 | 1398..1289 | 550 | 100 | Minus |
| 3R | 32079331 | 3R | 12465120..12465217 | 114..17 | 490 | 100 | Minus |
| 3R | 32079331 | 3R | 12505092..12505184 | 17..109 | 435 | 97.8 | Plus |
| 3R | 32079331 | 3R | 12508375..12508467 | 17..109 | 435 | 97.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 05:15:39 has no hits.
BO25941.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-15 11:02:14 Download gff for
BO25941.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5608-RA | 82..2142 | 17..2079 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:07:23 Download gff for
BO25941.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5608-RA | 82..2142 | 17..2079 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:46:57 Download gff for
BO25941.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5608-RA | 82..2142 | 17..2079 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:46:57 Download gff for
BO25941.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12462660..12462802 | 1939..2079 | 98 | <- | Minus |
| 3R | 12462856..12463098 | 1696..1938 | 100 | <- | Minus |
| 3R | 12463166..12463462 | 1399..1695 | 100 | <- | Minus |
| 3R | 12463525..12463633 | 1290..1398 | 100 | <- | Minus |
| 3R | 12463695..12464021 | 963..1289 | 100 | <- | Minus |
| 3R | 12464074..12464539 | 497..962 | 100 | <- | Minus |
| 3R | 12464607..12464837 | 266..496 | 99 | <- | Minus |
| 3R | 12464901..12465051 | 115..265 | 100 | <- | Minus |
| 3R | 12465120..12465217 | 17..114 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:07:23 Download gff for
BO25941.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8288888..8289184 | 1399..1695 | 100 | <- | Minus |
| arm_3R | 8289247..8289355 | 1290..1398 | 100 | <- | Minus |
| arm_3R | 8289417..8289743 | 963..1289 | 100 | <- | Minus |
| arm_3R | 8288382..8288524 | 1939..2079 | 98 | <- | Minus |
| arm_3R | 8288578..8288820 | 1696..1938 | 100 | <- | Minus |
| arm_3R | 8289796..8290261 | 497..962 | 100 | <- | Minus |
| arm_3R | 8290329..8290559 | 266..496 | 99 | <- | Minus |
| arm_3R | 8290623..8290773 | 115..265 | 100 | <- | Minus |
| arm_3R | 8290842..8290939 | 17..114 | 100 | | Minus |
BO25941.pep Sequence
Translation from 16 to 2095
> BO25941.pep
MEPPYAPLSESCAKALGDKVYEKRKLASQEIEKMVTEFNNKNNSAQIRKL
IEVLATDYATSRDANRRKGALIGLAAMGLGLGKDSGKYVQGMVTPIMTCL
SDPDIRVRYFACESLYNVVKVARSAIIPFFPELFAALSRLVTDSDQMVKD
GSELLDRLLKDIVTESSQTFNLQAFIPLLREHIYVKDAFARQYVISWISI
LNAVPDINMVNYLTEILDGLFVMLEDNTLEIQRMCETTISQFLKSIRNDS
SSVRMEDTINTLITHAQSPNELIKSIAITWIREFVQIFGPNVLPYASGIF
TAILPCLEYNVESKRSIKECAVSVNNSMMLLVSTKELKTETVAKIDLRSI
MDVLSQYLTHNSMHTKIAVLKWIHHLFTNFPNEMSVHASNLNTNLLSTLA
DNSDEVVLQSLSVLAEIVNSQESRELNDFNKSHYRKFLLSLLNLFSEEKL
ILENRASLIIRKLCVLLNAEYIYRTFAEIIAEGVPNLKFASTVVRLLNMI
LLTSTELFELRTSLRNISNEKSADLFQCLYKSWAHCPVSTLSLCLLTQSY
QHVSRLVTLFADVEITLELLTEFDKLVQLIESPIFAPLRLTLVSKANNCA
DAQYLAHALFGILMLLPQTEAFDTLRNRLQCVPNYWGHEPVDERNSLEYK
SGIDFDALEQHFIKLQKAHREQRIVHRKRSVITPESNASFLDH
BO25941.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:35:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5608-PA | 687 | CG5608-PA | 1..687 | 1..687 | 3461 | 100 | Plus |
