BO25944.complete Sequence
1273 bp assembled on 2010-06-29
GenBank Submission: KX794275
> BO25944.complete
GAAGTTATCAGTCGACATGCCGTACAACATGGACGTACTGATACCGGAAA
AGGACGAGCTCTCCGACTTGAAGCTAAAAGATGCGCACAGTTCCCTGGAC
GAACTGGACATGGAGGATCTCTACGTGCGTTACAAGAAACTGCAAAAGAC
ACTGGAGTTCATTGAAGTGCAGGAGGAGTACATCAAGGACGAGCAGCGAA
ACCTGAAAAAGGAGTATCTGCACGCCCAGGAGGAGGTGAAGCGCATCCAG
TCGGTGCCGCTGGTGATTGGCCAGTTCCTGGAGGCCGTCGATCAGAACAC
GGGCATTGTGGGCTCCACCACCGGCTCCAATTACTATGTGCGCATCCTGT
CCACCATCGATCGCGAGCTGCTGAAGCCCTCCGCCTCGGTGGCCCTGCAC
AAGCACAGCAACGCGCTGGTGGACGTGCTGCCACCAGAGGCGGATAGCTC
CATTTCGATGCTGCAGCCGGATGAGAAGCCCGACGTTAGCTATGCGGACA
TTGGTGGCATGGACATGCAGAAGCAGGAGATCCGCGAGGCAGTCGAACTG
CCGCTGACCCACTTCGAGCTGTACAAGCAGATTGGCATCGATCCGCCGCG
CGGCGTGCTTATGTACGGTCCGCCCGGTTGCGGCAAGACCATGTTGGCCA
AGGCGGTGGCCCATCATACGACGGCGTCGTTCATACGCGTCGTCGGCTCG
GAGTTCGTGCAGAAGTACCTCGGCGAGGGACCGCGCATGGTGCGCGACGT
TTTCAGGCTGGCCAAGGAGAACGCGCCGGCCATCATCTTCATTGACGAGA
TCGATGCGATTGCCACGAAGCGTTTCGATGCGCAGACTGGCGCCGATCGC
GAGGTGCAGCGCATTCTGCTCGAGCTGCTCAACCAGATGGACGGGTTCGA
TCAGACCACGAACGTTAAGGTGATCATGGCTACCAACAGGGCGGACACAC
TCGATCCGGCATTGCTGCGACCTGGTCGATTGGATCGTAAGATTGAGTTC
CCGCTGCCCGATCGCCGGCAGAAGCGACTCGTCTTCTCCACCATCACCTC
GAAGATGAACCTAAGCGAGGATGTCGATTTGGAGGAGTTTGTGGCGCGGC
CGGACAAGATCTCCGGTGCCGATATCAACGCCATTTGCCAAGAGGCGGGC
ATGCACGCGGTGCGTGAGAATCGCTACATCGTTTTGGCCAAGGACTTCGA
GAAGGGCTACAAGAACAATATCAAGAAGGACGAGCAGGAGCACGAGTTCT
ACAAAGCAAGCTTTCTAGACCAT
BO25944.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:36:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpt3-RB | 1242 | CG16916-PB | 1..1239 | 17..1255 | 6195 | 100 | Plus |
| Rpt3-RA | 1242 | CG16916-PA | 1..1239 | 17..1255 | 6195 | 100 | Plus |
| Rpt3R-RD | 1218 | CG9475-PD | 112..1174 | 152..1214 | 2090 | 79.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:36:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpt3-RB | 1553 | CG16916-RB | 213..1451 | 17..1255 | 6195 | 100 | Plus |
| Rpt3-RA | 1423 | CG16916-RA | 83..1321 | 17..1255 | 6195 | 100 | Plus |
| Rpt3R-RD | 1414 | CG9475-RD | 145..1207 | 152..1214 | 2090 | 79.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:36:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11125563..11126683 | 135..1255 | 5605 | 100 | Plus |
| 3R | 32079331 | 3R | 9754942..9755572 | 1214..584 | 1280 | 80.2 | Minus |
| 3R | 32079331 | 3R | 9755619..9756052 | 585..152 | 820 | 79.3 | Minus |
| X | 23542271 | X | 11125421..11125506 | 51..136 | 430 | 100 | Plus |
| 3R | 32079331 | 3R | 23753922..23754165 | 759..1002 | 290 | 74.6 | Plus |
| X | 23542271 | X | 21317013..21317337 | 680..1004 | 245 | 71.7 | Plus |
| X | 23542271 | X | 11125313..11125349 | 17..53 | 185 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:36:33 has no hits.
BO25944.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-29 17:46:14 Download gff for
BO25944.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpt3-RA | 126..1364 | 17..1257 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:38:32 Download gff for
BO25944.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpt3-RA | 83..1321 | 17..1257 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:56:32 Download gff for
BO25944.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpt3-RA | 83..1321 | 17..1257 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:56:32 Download gff for
BO25944.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11125313..11125348 | 17..52 | 100 | -> | Plus |
| X | 11125423..11125506 | 53..136 | 100 | -> | Plus |
| X | 11125565..11126683 | 137..1257 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:38:32 Download gff for
BO25944.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11019346..11019381 | 17..52 | 100 | -> | Plus |
| arm_X | 11019456..11019539 | 53..136 | 100 | -> | Plus |
| arm_X | 11019598..11020716 | 137..1257 | 99 | | Plus |
BO25944.pep Sequence
Translation from 16 to 1273
> BO25944.pep
MPYNMDVLIPEKDELSDLKLKDAHSSLDELDMEDLYVRYKKLQKTLEFIE
VQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTGIVGS
TTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQ
PDEKPDVSYADIGGMDMQKQEIREAVELPLTHFELYKQIGIDPPRGVLMY
GPPGCGKTMLAKAVAHHTTASFIRVVGSEFVQKYLGEGPRMVRDVFRLAK
ENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNV
KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLS
EDVDLEEFVARPDKISGADINAICQEAGMHAVRENRYIVLAKDFEKGYKN
NIKKDEQEHEFYKASFLDH
BO25944.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:19:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpt3-PB | 413 | CG16916-PB | 1..413 | 1..413 | 2104 | 100 | Plus |
| Rpt3-PA | 413 | CG16916-PA | 1..413 | 1..413 | 2104 | 100 | Plus |
| Rpt3R-PD | 405 | CG9475-PD | 20..404 | 28..412 | 1731 | 85.2 | Plus |
| Rpt3R-PC | 405 | CG9475-PC | 20..404 | 28..412 | 1731 | 85.2 | Plus |
| Rpt2-PB | 439 | CG5289-PB | 63..431 | 41..407 | 1013 | 50.4 | Plus |
