BO25948.complete Sequence
3208 bp assembled on 2010-07-15
GenBank Submission: KX797454
> BO25948.complete
GAAGTTATCAGTCGACATGTGTTTCAGGCCACGCCTCGGTCTAAGAAGAA
TTACAAAACAAGTTCAAAAATGGCTTAATCGACAACAATATCCAATGAGT
ACGGCCTCAGTTGTGGTCCAATATCACGAAGAACCAGACAAATCAGATGG
TGACAGCAAACTTTACCGTGCCTTGACCTTATCAAATGGATTACGTGCTA
TGCTAATATCGGATTCTTATATTGACGAGCCGTCAATTCATCGTGCGTCC
AGAGAAAGTTTGAATTCCTCCACCGAGAATTTTAATGGGAAATTGGCGGC
ATGTGCAGTACTTGTTGGCGTTGGATCATTTAGTGAACCGCAACAATATC
AGGGATTAGCACACTTTGTGGAACACATGATATTTATGGGGTCTGAGAAA
TTCCCCGTAGAGAACGAATTCGATTCGTTTGTGACCAAAAGCGGCGGTTT
CAGTAATGCGCATACTGAAAACGAGGAGACTTGCTTCTACTTTGAGTTGG
ATCAAACTCACCTGGATAGGGGTATGGATCTATTCATGAACCTAATGAAG
GCTCCACTAATGCTTCCCGATGCCATGAGTCGCGAACGCTCTGCCGTCCA
GTCGGAGTTCGAACAGACCCATATGAGAGATGAGGTGCGGAGAGATCAGA
TCCTGGCGAGCTTAGCCAGTGAGGGATATCCACATGGCACTTTCAGTTGG
GGAAATTATAAGACCCTTAAAGAGGGCGTCGATGATAGCAGCCTGCACAA
AGAGCTTCACAAGTTTTACCGAGATCACTACGGCTCCAACCGAATGGTTG
TTGCACTCCAAGCCCAGCTTTCGTTGGATGAGTTGGAGGAATTGCTGGTC
CGTCATTGTGCAGATATTCCTACTAGCCAGCAAAATTCCATTGACGTATC
CCAGTTAAATTACCAAAAAGCCTTTCGAGACCAATTCTACAAGGATGTAT
TCCTAGTTCAGCCCGTTGAAGATGTGTGCAAGCTGGAGCTTACTTGGGTG
CTACCCCCAATGAAGAACTTTTACCGCAGCAAGCCGGATATGTTTATTTC
CCAACTCATTGGTTATGAGGGAGTTGGAAGTCTATGTGCATACCTACGTC
ATCACCTTTGGTGCATTAGCGTTGTGGCAGGAGTTGCTGAAAGTAGTTTC
GATTCCAACTCAATTTACTCCTTGTTCAATATATGCATTTATCTGTCTGA
CGATGGCTTCGATCACATAGACGAGGTGTTGGAAGCCACATTTGCGTGGG
TTAAGCTTATAATTAATAGCGATCAACTTCAGGATTCCTATAAGGAATCT
CAACAAATTGAAAACAATAATTTTCGATTTCAAATCGAGCCGCCTCCTAT
TGACCATGTTCAAAGCATTGTTGAGAGCTTTAACTACCTGCCATCAAAAG
ATGTACTTACTGGACCTCAGCTCTATTTTCAGTACGAAGAATCGGCTATT
GAGCTTCTAAGACAGCATATGAATAAATTTAATTTTAATATAATGATCTC
ATCCTATATACCATATGAGAAAAATGAATACGATCAGAGAGAACCTTGGT
TCGGAACTCAGTTCAAAACCATCTCTATGCCCCCAAAATGGCAAACTATG
TGGGAACAGTCAGCGACTATAAAAGAGTTGCACTATCCGCAACCAAATCC
CTTTGTAACCACGGATTTTAAAATACATTGGGTAGAATCGGGAAAACCAC
ATGTTTCCAGAAGTCCGAAGGCTTTGATCAGAAATGATTTATGCGAACTC
TGGTTTCGCCAGGATAACATTTTCAAACTTCCAGATGGGTATATAAACCT
GTATTTTATCACTCCACTAGTTCGTGAAAGTGTCAAGCAATATATGCTGG
GAGTCCTATTTACCTATTTAGTGGAATTCAGAATGGCAGAGCAATTATAC
CCAGCCTTGGAGGCAGGTCTAACTTATGGCCTATACATCGGTGATAAAGG
ATTGGTTATGAGAGTCAGTGGGTACAATGAAAAGCTGCCCCTGTTGGTAG
AAATTATATTAAACATGATGCAAACTATTGAGCTGGATATAGGTCAAGTA
AATGCTTTCAAGGATCTTAAGAAACGACAAATTTATAATGCCCTTATAAA
CGGGAAATCTCTTAATCTTGATTTGCGCCTTAGCATTTTGGAAAATAAGC
GTTTCAGCATGATTTCAAAATACGAATCTGTTGACGATATAACCATGGAT
GATATAAAATCCTTTAAGGAAAATTTTCATAAAAAAATGTATGTTAAAGG
TTTAATACAGGGCAATTTTACGGAAGACCAAGCCACAGATTTAATGCAAA
AAGTTCTTGACACATATAAAAGCGAAAAGTTGGACAATTTATCGGCCTTG
GATAATCATTTACTGCAAATCCCATTGGGATCATACTATTTAAGAGCTAA
AACGCTTAACGAGGATGATTCAAATACAATTATAACCAATTACTATCAAA
TAGGACCGAGTGATCTGAAAATGGAATGCATCATGGATCTGGTGGAATTA
ATTGTCGAGGAGCCGTTTTTCAACCAATTAAGGACTCAGGAGCAATTGGG
CTACAGCTTGGGAATTCATCAACGAATTGGATATGGTGTGTTGGCCTTTC
TTATCACCATAAATACTCAGGAGACAAAACATCGAGCAGATTATGTGGAG
CAACGTATTGAAGCCTTTAGGTCTCGAATGGCTGAACTTGTCTCCCAGAT
GAGTGATACAGAGTTTAAGAACATACGAGAAACTCTAATTAATGGAAAAA
AGCTGGGCGACACAAGTTTGGATGAGGAAGTTTTGAGAAATTGGAGTGAG
ATTGTCACAAAAGAATACTTCTTTAATCGGATAGAAACGCAAATACAAAT
GCTGAGCCATTTAACGAAGGAGGACGTATTGAACTTCCTTAATGATAATG
ATAAAAACAATTTAAGAAAACTTTCTGTCCAAGTGGTGGGAAACCATAAT
CAAACATCAAATTCAACAGCCCAAGCCAGTCGATCCGGATCTTTGAGTGA
CTTATTAGACGATGTACAGGACAATATGGCAAATGAAACAGATTCAGCTA
AGCCAATGACCGATAAGATCAGACTTGAGTTTTTGGGAGAGAGCGATGAT
CCTTCAAGCATTAAGGATATTTATGCTTTCAAAAAGGATCTATATGTCTT
TCCCCTGTTCAACACCAATCCCAATCTTGCAAATAAATCGGCAAGCTTTC
TAGACCAT
BO25948.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:16:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10588-RB | 3177 | CG10588-PB | 1..3174 | 17..3190 | 15870 | 100 | Plus |
| CG10588-RA | 3177 | CG10588-PA | 1..3174 | 17..3190 | 15870 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:16:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10588-RB | 3727 | CG10588-RB | 47..3221 | 16..3190 | 15875 | 100 | Plus |
| CG10588-RA | 3237 | CG10588-RA | 47..3221 | 16..3190 | 15875 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:16:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20956980..20960154 | 16..3190 | 15875 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 05:16:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 1543..1608 | 1436..1502 | 134 | 68.7 | Plus |
BO25948.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-15 11:02:17 Download gff for
BO25948.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10588-RA | 1..3174 | 17..3192 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:07:29 Download gff for
BO25948.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10588-RA | 48..3221 | 17..3192 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:47:08 Download gff for
BO25948.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10588-RA | 48..3221 | 17..3192 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:47:08 Download gff for
BO25948.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20956981..20960154 | 17..3192 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:07:29 Download gff for
BO25948.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20950081..20953254 | 17..3192 | 99 | | Plus |
BO25948.pep Sequence
Translation from 16 to 3208
> BO25948.pep
MCFRPRLGLRRITKQVQKWLNRQQYPMSTASVVVQYHEEPDKSDGDSKLY
RALTLSNGLRAMLISDSYIDEPSIHRASRESLNSSTENFNGKLAACAVLV
GVGSFSEPQQYQGLAHFVEHMIFMGSEKFPVENEFDSFVTKSGGFSNAHT
ENEETCFYFELDQTHLDRGMDLFMNLMKAPLMLPDAMSRERSAVQSEFEQ
THMRDEVRRDQILASLASEGYPHGTFSWGNYKTLKEGVDDSSLHKELHKF
YRDHYGSNRMVVALQAQLSLDELEELLVRHCADIPTSQQNSIDVSQLNYQ
KAFRDQFYKDVFLVQPVEDVCKLELTWVLPPMKNFYRSKPDMFISQLIGY
EGVGSLCAYLRHHLWCISVVAGVAESSFDSNSIYSLFNICIYLSDDGFDH
IDEVLEATFAWVKLIINSDQLQDSYKESQQIENNNFRFQIEPPPIDHVQS
IVESFNYLPSKDVLTGPQLYFQYEESAIELLRQHMNKFNFNIMISSYIPY
EKNEYDQREPWFGTQFKTISMPPKWQTMWEQSATIKELHYPQPNPFVTTD
FKIHWVESGKPHVSRSPKALIRNDLCELWFRQDNIFKLPDGYINLYFITP
LVRESVKQYMLGVLFTYLVEFRMAEQLYPALEAGLTYGLYIGDKGLVMRV
SGYNEKLPLLVEIILNMMQTIELDIGQVNAFKDLKKRQIYNALINGKSLN
LDLRLSILENKRFSMISKYESVDDITMDDIKSFKENFHKKMYVKGLIQGN
FTEDQATDLMQKVLDTYKSEKLDNLSALDNHLLQIPLGSYYLRAKTLNED
DSNTIITNYYQIGPSDLKMECIMDLVELIVEEPFFNQLRTQEQLGYSLGI
HQRIGYGVLAFLITINTQETKHRADYVEQRIEAFRSRMAELVSQMSDTEF
KNIRETLINGKKLGDTSLDEEVLRNWSEIVTKEYFFNRIETQIQMLSHLT
KEDVLNFLNDNDKNNLRKLSVQVVGNHNQTSNSTAQASRSGSLSDLLDDV
QDNMANETDSAKPMTDKIRLEFLGESDDPSSIKDIYAFKKDLYVFPLFNT
NPNLANKSASFLDH
BO25948.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:36:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10588-PB | 1058 | CG10588-PB | 1..1058 | 1..1058 | 5516 | 100 | Plus |
| CG10588-PA | 1058 | CG10588-PA | 1..1058 | 1..1058 | 5516 | 100 | Plus |
| CG2025-PA | 1147 | CG2025-PA | 47..1129 | 34..1052 | 2485 | 44.8 | Plus |
| Ide-PB | 990 | CG5517-PB | 28..945 | 41..987 | 882 | 26.7 | Plus |
| CG3731-PB | 470 | CG3731-PB | 50..238 | 82..276 | 170 | 26 | Plus |
