BO25949.complete Sequence
1135 bp assembled on 2010-06-29
GenBank Submission: KX795632
> BO25949.complete
GAAGTTATCAGTCGACATGTCCCTGCCATCCAGAGCCAATATCGGATTAC
TCAACTGGCTCATCGGCTGGCTGCTGCTGCTGTCGATGGTTTTGCTCAGA
GGCTACAACGCTGCGTTGGCACCCACGCCGCCCACAACGTCAACTACAAC
CATCTCGCCCTCCAATCTGCTGCCCTACTTCGACTTTGATGTGCCGCGCA
ACTTGACCGTAACCGTTGGCCAGACCGGCTTTCTCCATTGCCGCGTGGAA
CGACTCGGCGATAAGGACGTCTCTTGGATACGCAAACGTGATCTGCATAT
ACTCACCGCCGGCGGCACAACCTACACATCCGATCAGCGTTTTCAGGTTC
TGCGACCCGATGGCTCCGCCAATTGGACACTGCAAATCAAGTATCCGCAG
CCACGTGACTCCGGCGTCTACGAGTGCCAAATCAACACGGAGCCCAAGAT
GTCCCTGTCGTACACCTTCAACGTAGTGGAACTCAAAGCGGAAATCTTCG
GGCCCAGCGATCTGATGGTGAAAACCGGCAGTGACATAAACCTAACATGT
AAAATTATGCAAGGACCCCACGAGCTGGGCAACATATTCTGGTACAAAGG
CAGCGAAATGCTTGATGGCAAGGGAGAAAACGAAATCGACAGCTCCATGG
CCCGGATTCGCGTCGAGGATGATTGGACTGACGGCCTGACTTCCAGATTA
AAAATCAAGCGCGCCATGCCCGGCGATACCGGCAACTACACCTGTGTGCC
GACGGTGGCAAAAACCTCGAGCGTCTATGTGCACGTAATTATTGGCGAAC
ATCCTGCGGCCATGCAACACAATTCGAGTAGCAACAGCAACAGCTTCTAC
TGCGGCATCTGCTGCATGCTGCTGAGCATTGTGTCCTGCTGCCTGCAGCA
TTTTTATGAAACGGGGTGTGGATATCTCCATGCCGCGGCAGCGTTGGCAA
AATCCGCGGGATTGGGGCCCCCCAAGCGAGCAACGCTAACGACCAGCGAA
ACAGGAATAAGTGCTGCAGAAGTTGCAGCAGCCGCAGGCGCATCTGCAGC
AGTAGCATCCGCATTAGCAACGTGCAACATGTTGAGAGAACGCCCAGCGG
CAATTCGGTGTCTGAGAGCAAGCTTTCTAGACCAT
BO25949.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:36:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dpr-RB | 1104 | CG13439-PB | 1..1101 | 17..1117 | 5505 | 100 | Plus |
| dpr-RA | 1104 | CG13439-PA | 1..1101 | 17..1117 | 5505 | 100 | Plus |
| dpr2-RG | 1233 | CG33507-PG | 463..593 | 320..450 | 205 | 77.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:36:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dpr-RB | 2859 | CG13439-RB | 704..1804 | 17..1117 | 5505 | 100 | Plus |
| dpr-RA | 3598 | CG13439-RA | 704..1804 | 17..1117 | 5505 | 100 | Plus |
| dpr2-RG | 1661 | CG33507-RG | 833..963 | 320..450 | 205 | 77.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:36:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20748325..20748648 | 794..1117 | 1620 | 100 | Plus |
| 2R | 25286936 | 2R | 20726043..20726213 | 100..270 | 855 | 100 | Plus |
| 2R | 25286936 | 2R | 20734315..20734450 | 344..479 | 680 | 100 | Plus |
| 2R | 25286936 | 2R | 20745784..20745905 | 479..600 | 610 | 100 | Plus |
| 2R | 25286936 | 2R | 20747422..20747523 | 694..795 | 510 | 100 | Plus |
| 2R | 25286936 | 2R | 20746004..20746102 | 598..696 | 495 | 100 | Plus |
| 2R | 25286936 | 2R | 20699186..20699271 | 17..102 | 430 | 100 | Plus |
| 2R | 25286936 | 2R | 20734170..20734249 | 269..348 | 400 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 14:36:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2740..2797 | 807..866 | 142 | 73.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1072..1134 | 1016..1079 | 137 | 70.3 | Plus |
BO25949.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-29 17:46:13 Download gff for
BO25949.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr-RA | 337..1437 | 17..1119 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:38:26 Download gff for
BO25949.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr-RA | 704..1804 | 17..1119 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:56:28 Download gff for
BO25949.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr-RA | 704..1804 | 17..1119 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:56:28 Download gff for
BO25949.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20699186..20699270 | 17..101 | 100 | -> | Plus |
| 2R | 20726045..20726211 | 102..268 | 100 | -> | Plus |
| 2R | 20734170..20734247 | 269..346 | 100 | -> | Plus |
| 2R | 20734318..20734450 | 347..479 | 100 | -> | Plus |
| 2R | 20745785..20745904 | 480..599 | 100 | -> | Plus |
| 2R | 20746006..20746102 | 600..696 | 100 | -> | Plus |
| 2R | 20747425..20747522 | 697..794 | 100 | -> | Plus |
| 2R | 20748326..20748648 | 795..1119 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:38:26 Download gff for
BO25949.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16633511..16633607 | 600..696 | 100 | -> | Plus |
| arm_2R | 16634930..16635027 | 697..794 | 100 | -> | Plus |
| arm_2R | 16586691..16586775 | 17..101 | 100 | -> | Plus |
| arm_2R | 16613550..16613716 | 102..268 | 100 | -> | Plus |
| arm_2R | 16621675..16621752 | 269..346 | 100 | -> | Plus |
| arm_2R | 16621823..16621955 | 347..479 | 100 | -> | Plus |
| arm_2R | 16633290..16633409 | 480..599 | 100 | -> | Plus |
| arm_2R | 16635831..16636153 | 795..1119 | 99 | | Plus |
BO25949.pep Sequence
Translation from 16 to 1135
> BO25949.pep
MSLPSRANIGLLNWLIGWLLLLSMVLLRGYNAALAPTPPTTSTTTISPSN
LLPYFDFDVPRNLTVTVGQTGFLHCRVERLGDKDVSWIRKRDLHILTAGG
TTYTSDQRFQVLRPDGSANWTLQIKYPQPRDSGVYECQINTEPKMSLSYT
FNVVELKAEIFGPSDLMVKTGSDINLTCKIMQGPHELGNIFWYKGSEMLD
GKGENEIDSSMARIRVEDDWTDGLTSRLKIKRAMPGDTGNYTCVPTVAKT
SSVYVHVIIGEHPAAMQHNSSSNSNSFYCGICCMLLSIVSCCLQHFYETG
CGYLHAAAALAKSAGLGPPKRATLTTSETGISAAEVAAAAGASAAVASAL
ATCNMLRERPAAIRCLRASFLDH
BO25949.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:11:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dpr-PB | 367 | CG13439-PB | 1..367 | 1..367 | 1931 | 100 | Plus |
| dpr-PA | 367 | CG13439-PA | 1..367 | 1..367 | 1931 | 100 | Plus |
| dpr4-PB | 323 | CG33512-PB | 45..256 | 53..272 | 604 | 54.1 | Plus |
| dpr2-PG | 410 | CG33507-PG | 106..353 | 53..290 | 592 | 49.2 | Plus |
| dpr2-PF | 410 | CG33507-PF | 106..353 | 53..290 | 592 | 49.2 | Plus |
