BO25951.complete Sequence
1642 bp assembled on 2010-06-29
GenBank Submission: KX796606
> BO25951.complete
GAAGTTATCAGTCGACATGTTGTTGTGCGACGGACTTGGCCCGGAGCCAC
CGCGGCAAAGGCATCGAAATCGAACCAGTGCCGCCAGGATTAGAAAAAGA
CCGAAATGCTGCTGCGGCGATGGCGGCAGCGGCAATCAGGCGGAGCAGCC
CGGCGGGATAGTTAGCAACCCAATTAGTTATGGCCAAAGTCTGACAACAT
TGGCGCGGGTCACGGCGGCCGCACTGACCACGGCGGCCATGCTGCACACA
ACGAATGCCCTGGCTGCCACCGGCTCATCCAGCGCATCCAACTCTTCCAC
CGGCGGAATAGCACTGCCGCTGGGCACTGCCACACCTGCCACACACGAAC
TGAATGCCACACAGCCGTTTGGCGGCTCGGGTCTGAACTTCAACGAAAGC
GGCGCAGGATTAAGTGACCATCATCATCATCAACAACACAATCCCGACGA
GGATTGGCTGGACAACATCGTTTGGGTGTTCAAGGCCTTTGTCATGCTGC
TCATCATCATTGCGGCCATCTGCGGCAATCTGCTTGTTATTATTTCTGTG
ATGCGTGTTAGAAAATTAAGAGTTATAACGAATTACTTTGTAGTTTCCTT
AGCCATGGCTGATATAATGGTCGCTATTATGGCCATGACATTTAACTTTA
GTGTGCAAGTAACTGGGCGGTGGAACTTCAGCCCCTTCCTGTGCGATTTG
TGGAACAGCCTCGATGTCTACTTCTCAACAGCGAGTATTTTGCATTTATG
CTGCATATCTGTGGATAGATACTATGCTATTGTTAAGCCCCTCAAGTATC
CGATTAGCATGACGAAACGCGTGGTCGGCATTATGCTGCTAAACACATGG
ATATCGCCGGCACTGCTCTCCTTCTTGCCCATTTTCATCGGCTGGTACAC
CACGCCGCAGCACCAGCAGTTCGTCATCCAGAATCCGACGCAGTGCTCGT
TCGTGGTGAACAAGTACTACGCCGTCATCTCGAGCTCCATATCGTTCTGG
ATACCCTGCACCATTATGATATTCACCTACCTGGCCATCTTCCGGGAAGC
CAATCGGCAGGAGAAGCAGCTGATGATGCGGCACGGCAATGCCATGCTGA
TGCACCGACCATCCATGCAGCCATCAGGCGAGGCGCTGAGCGGATCCGGG
TCGTCGAAAACATTGACGCTGCACGAGGTCGAGCAGGAGCACACCCCCAC
TAAGGACAAGCACTTAATCAAAATGAAGCGGGAGCACAAGGCCGCACGCA
CGCTGGGCATCATCATGGGCACCTTCATCCTCTGCTGGCTGCCTTTCTTC
CTGTGGTACACACTCTCCATGACCTGCGAGGAGTGCCAAGTGCCGGACAT
AGTCGTCTCAATCCTCTTCTGGATCGGGTACTTCAACTCAACGCTAAACC
CGCTGATCTACGCGTACTTCAACCGCGACTTCCGGGAGGCGTTCCGCAAC
ACGCTGCTCTGCCTGTTCTGCAATTGGTGGAAGGATCGCCACCTGCCTCT
GGACATCGACATCCGGCGCTCCAGCCTGCGCTACGACCAGCGGGCGAAGA
GCGTCTACTCGGAGAGCTACCTTAACTCGACAACGCCCTCGCATCGCCGC
CAGTCTCAGATGGTGGACAACTTAGCAAGCTTTCTAGACCAT
BO25951.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:35:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Octbeta2R-RG | 1611 | CG33976-PG | 1..1608 | 17..1624 | 8025 | 99.9 | Plus |
| Octbeta2R-RE | 1611 | CG33976-PE | 1..1608 | 17..1624 | 8025 | 99.9 | Plus |
| Octbeta2R-RD | 1611 | CG33976-PD | 1..1608 | 17..1624 | 8025 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:35:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Octbeta2R-RG | 6672 | CG33976-RG | 2760..4368 | 16..1624 | 8030 | 99.9 | Plus |
| Octbeta2R-RE | 6593 | CG33976-RE | 2681..4289 | 16..1624 | 8030 | 99.9 | Plus |
| Octbeta2R-RD | 3063 | CG33976-RD | 1015..2623 | 16..1624 | 8030 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:35:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12560401..12560955 | 570..16 | 2775 | 100 | Minus |
| 3R | 32079331 | 3R | 12554239..12554604 | 1132..767 | 1800 | 99.5 | Minus |
| 3R | 32079331 | 3R | 12552929..12553248 | 1624..1305 | 1600 | 100 | Minus |
| 3R | 32079331 | 3R | 12553767..12553949 | 1307..1125 | 915 | 100 | Minus |
| 3R | 32079331 | 3R | 12556975..12557077 | 671..569 | 515 | 100 | Minus |
| 3R | 32079331 | 3R | 12554676..12554775 | 768..669 | 500 | 100 | Minus |
| 3R | 32079331 | 3R | 12512870..12512959 | 1456..1367 | 255 | 85.6 | Minus |
| 3R | 32079331 | 3R | 22514650..22514729 | 1228..1307 | 235 | 86.2 | Plus |
| 3R | 32079331 | 3R | 12513141..12513213 | 1307..1235 | 230 | 87.7 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:35:49 has no hits.
BO25951.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-29 17:46:11 Download gff for
BO25951.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Octbeta2R-RA | 6..1608 | 22..1626 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:38:16 Download gff for
BO25951.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Octbeta2R-RC | 1187..2789 | 22..1626 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:56:21 Download gff for
BO25951.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Octbeta2R-RD | 1021..2623 | 22..1626 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:56:21 Download gff for
BO25951.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12552927..12553247 | 1306..1626 | 99 | <- | Minus |
| 3R | 12553769..12553946 | 1128..1305 | 100 | <- | Minus |
| 3R | 12554244..12554602 | 769..1127 | 99 | <- | Minus |
| 3R | 12554676..12554774 | 670..768 | 100 | <- | Minus |
| 3R | 12556977..12557075 | 571..669 | 100 | <- | Minus |
| 3R | 12560401..12560949 | 22..570 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:38:16 Download gff for
BO25951.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8378649..8378969 | 1306..1626 | 99 | <- | Minus |
| arm_3R | 8379491..8379668 | 1128..1305 | 100 | <- | Minus |
| arm_3R | 8379966..8380324 | 769..1127 | 99 | <- | Minus |
| arm_3R | 8380398..8380496 | 670..768 | 100 | <- | Minus |
| arm_3R | 8382699..8382797 | 571..669 | 100 | <- | Minus |
| arm_3R | 8386123..8386671 | 22..570 | 100 | | Minus |
BO25951.pep Sequence
Translation from 16 to 1642
> BO25951.pep
MLLCDGLGPEPPRQRHRNRTSAARIRKRPKCCCGDGGSGNQAEQPGGIVS
NPISYGQSLTTLARVTAAALTTAAMLHTTNALAATGSSSASNSSTGGIAL
PLGTATPATHELNATQPFGGSGLNFNESGAGLSDHHHHQQHNPDEDWLDN
IVWVFKAFVMLLIIIAAICGNLLVIISVMRVRKLRVITNYFVVSLAMADI
MVAIMAMTFNFSVQVTGRWNFSPFLCDLWNSLDVYFSTASILHLCCISVD
RYYAIVKPLKYPISMTKRVVGIMLLNTWISPALLSFLPIFIGWYTTPQHQ
QFVIQNPTQCSFVVNKYYAVISSSISFWIPCTIMIFTYLAIFREANRQEK
QLMMRHGNAMLMHRPSMQPSGEALSGSGSSKTLTLHEVEQEHTPTKDKHL
IKMKREHKAARTLGIIMGTFILCWLPFFLWYTLSMTCEECQVPDIVVSIL
FWIGYFNSTLNPLIYAYFNRDFREAFRNTLLCLFCNWWKDRHLPLDIDIR
RSSLRYDQRAKSVYSESYLNSTTPSHRRQSQMVDNLASFLDH
BO25951.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:26:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Octbeta2R-PG | 536 | CG33976-PG | 1..536 | 1..536 | 2845 | 100 | Plus |
| Octbeta2R-PE | 536 | CG33976-PE | 1..536 | 1..536 | 2845 | 100 | Plus |
| Octbeta2R-PD | 536 | CG33976-PD | 1..536 | 1..536 | 2845 | 100 | Plus |
| Octbeta2R-PC | 536 | CG33976-PC | 1..536 | 1..536 | 2845 | 100 | Plus |
| Octbeta2R-PF | 630 | CG33976-PF | 1..536 | 1..536 | 2845 | 100 | Plus |
