Clone BO25962 Report

Search the DGRC for BO25962

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:259
Well:62
Vector:pDNR-Dual
Associated Gene/TranscriptCG9572-RA
Protein status:BO25962.pep: Imported from assembly
Sequenced Size:1357

Clone Sequence Records

BO25962.complete Sequence

1357 bp assembled on 2010-06-29

GenBank Submission: KX798670

> BO25962.complete
GAAGTTATCAGTCGACATGCAGCAGCTCCTGGTCGTGGCCCTGGTGGCGG
TGGCCATCGCGTCCTTGCCCCAACTGGCCGCAGGTAAAAAGCTGGGGAAG
CGCTGCGTGAACTGCACGTACCGCACTTACTACACCTACGGCGATGGGCG
ATCCCTGCAGCGGGTTGTCTATAGAGATCCGGTCTACACACGTGCGCAGT
CCTACGCGAGCGGATGCAGCGGTAGCCCGTGCGGCGTGAACGCCGTGTGC
CAGGAGGCCTCCGGAGGACGGCCCGTCTGCTCGTGCCCGCCCGGATTCAG
CGGTAATCCGCTCACCCACTGCAATCGCGGCGAGTGCCTGGACAACGTCG
ACTGTCGCGACAACCTGCAGTGCAAGGACAATCGCTGCGTTAATCCCTGC
GTGGGTGCCTGTGGCATTGGCTCCAATTGTGACGCCCGCAACCACGTGGC
CGTGTGCAGCTGCCCCGCCGGCTACAATGGCGACCCATACCACGCCTGCC
ACCTCAACGATCCGGAGGAGCAGTGCCATCCCAGTCCGTGCGGCGTTAAC
ACCAAGTGCGAGATCATCAACGGCGTGCCCACCTGCTCATGCGTTCACGG
CTATGTGGGCAATCCGCTGAGCGGCTGTCGCCACGAGTGCGATCACGATG
GCGACTGCAGCAGCCGGGACATGTGCTCCAGCAACTTCAAGTGCGTGCCG
GCATGCGGGCAGTGCGGCACTGGCGCCACCTGCCGAACGGTCAGCAATCA
CCGGGCTGTCTGCGAGTGCCCCAAGGGCTACATTGGCAGCCCGTACACGG
AGTGCCGACCGGAGTGCTATGGCGATGCCGACTGCCCGGCCGGGCGACCC
GCCTGCTTCTACGGCATCTGCAAGAACACCTGCGAGGGTGCCTGCGGCAT
CGGCGCCGACTGCAACCTGCGCGGCCTCACACCCGTCTGCAGCTGCCCCC
GCGACATGACCGGCGATCCCTTCGTGCGCTGCCGTCCCTTCACCAAGGAG
GACCTTTGCGACCCCAATCCGTGCGGCACCAACGCCATCTGCGTGCCCGG
ACACGACAACACCGGCCGCGAGCGGCCCGTCTGCAACTGCCTGCCCGGCC
ACACCGGCAATCCGCTGAGCCACTGCACCCGGGGTGAGTGCCTGAGCAAC
AACGAGTGCCCCGACCATCGCGCCTGCATCAACTACCAGTGCATCGATCC
CTGCATCGGCAAGTGTGCCACTGGAGCCAGCTGCGAGCCCAAGGCCCACC
TGGCTGTCTGCCGCTGTCCACAGGGACAGTCGGGCGACGCCCTGGTGTCC
TGTCGCCAGACGCGCACCTTTCCCGTGGCCAAGTACCACGCAAGCTTTCT
AGACCAT

BO25962.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:35:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG9572-RA 1326 CG9572-PA 1..1323 17..1339 6615 100 Plus
CG9572-RB 1323 CG9572-PB 3..1320 22..1339 6590 100 Plus
CG9572-RD 1215 CG9572-PD 67..1212 194..1339 5730 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:35:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG9572-RA 1667 CG9572-RA 136..1458 17..1339 6615 100 Plus
CG9572-RB 1664 CG9572-RB 138..1455 22..1339 6590 100 Plus
CG9572-RD 1556 CG9572-RD 202..1347 194..1339 5730 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:35:27
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20154197..20154815 515..1133 3095 100 Plus
X 23542271 X 20150597..20150837 194..434 1205 100 Plus
X 23542271 X 20155098..20155305 1132..1339 1040 100 Plus
X 23542271 X 20150061..20150236 19..194 880 100 Plus
X 23542271 X 20150945..20151026 434..515 410 100 Plus
Blast to na_te.dros performed on 2014-11-26 14:35:28 has no hits.

BO25962.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-29 17:46:08 Download gff for BO25962.complete
Subject Subject Range Query Range Percent Splice Strand
CG9572-RA 129..1451 17..1341 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:38:07 Download gff for BO25962.complete
Subject Subject Range Query Range Percent Splice Strand
CG9572-RA 136..1458 17..1341 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:56:13 Download gff for BO25962.complete
Subject Subject Range Query Range Percent Splice Strand
CG9572-RA 136..1458 17..1341 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:56:13 Download gff for BO25962.complete
Subject Subject Range Query Range Percent Splice Strand
X 20150598..20150836 195..433 100 -> Plus
X 20150945..20151026 434..515 100 -> Plus
X 20150060..20150236 17..194 99 -> Plus
X 20154198..20154814 516..1132 100 -> Plus
X 20155099..20155305 1133..1341 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:38:07 Download gff for BO25962.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 20044631..20044869 195..433 100 -> Plus
arm_X 20044093..20044269 17..194 99 -> Plus
arm_X 20044978..20045059 434..515 100 -> Plus
arm_X 20048231..20048847 516..1132 100 -> Plus
arm_X 20049132..20049338 1133..1341 99   Plus

BO25962.pep Sequence

Translation from 16 to 1357

> BO25962.pep
MQQLLVVALVAVAIASLPQLAAGKKLGKRCVNCTYRTYYTYGDGRSLQRV
VYRDPVYTRAQSYASGCSGSPCGVNAVCQEASGGRPVCSCPPGFSGNPLT
HCNRGECLDNVDCRDNLQCKDNRCVNPCVGACGIGSNCDARNHVAVCSCP
AGYNGDPYHACHLNDPEEQCHPSPCGVNTKCEIINGVPTCSCVHGYVGNP
LSGCRHECDHDGDCSSRDMCSSNFKCVPACGQCGTGATCRTVSNHRAVCE
CPKGYIGSPYTECRPECYGDADCPAGRPACFYGICKNTCEGACGIGADCN
LRGLTPVCSCPRDMTGDPFVRCRPFTKEDLCDPNPCGTNAICVPGHDNTG
RERPVCNCLPGHTGNPLSHCTRGECLSNNECPDHRACINYQCIDPCIGKC
ATGASCEPKAHLAVCRCPQGQSGDALVSCRQTRTFPVAKYHASFLDH

BO25962.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:26:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG9572-PA 441 CG9572-PA 1..441 1..441 2579 100 Plus
CG9572-PB 440 CG9572-PB 2..440 3..441 2569 100 Plus
CG9572-PD 404 CG9572-PD 1..404 1..441 2324 91.6 Plus
dp-PZ 15998 CG33196-PZ 13030..13462 52..436 801 37.9 Plus
dp-PY 18095 CG33196-PY 15140..15559 67..436 799 38.1 Plus
dp-PZ 15998 CG33196-PZ 5698..6119 64..436 778 36.8 Plus
dp-PZ 15998 CG33196-PZ 12402..12824 67..437 774 36.6 Plus
dp-PZ 15998 CG33196-PZ 6553..6970 67..429 769 37.7 Plus
dp-PZ 15998 CG33196-PZ 8577..8992 67..430 765 36.8 Plus
dp-PZ 15998 CG33196-PZ 11126..11538 67..429 764 35.2 Plus
dp-PZ 15998 CG33196-PZ 6237..6645 67..430 758 36.3 Plus
dp-PZ 15998 CG33196-PZ 9852..10265 67..432 757 37 Plus
dp-PZ 15998 CG33196-PZ 7938..8353 67..429 753 35 Plus
dp-PZ 15998 CG33196-PZ 12727..13144 67..438 747 37.2 Plus
dp-PZ 15998 CG33196-PZ 13471..13890 67..433 744 36.3 Plus
dp-PZ 15998 CG33196-PZ 4946..5369 67..437 742 36.1 Plus
dp-PZ 15998 CG33196-PZ 7198..7609 67..429 742 37.2 Plus
dp-PZ 15998 CG33196-PZ 9071..9521 30..429 741 36 Plus
dp-PZ 15998 CG33196-PZ 8903..9319 67..443 739 34.6 Plus
dp-PZ 15998 CG33196-PZ 13367..13787 67..436 732 36.8 Plus
dp-PZ 15998 CG33196-PZ 7300..7723 67..439 731 33.9 Plus
dp-PZ 15998 CG33196-PZ 11450..11857 67..430 731 35.4 Plus
dp-PZ 15998 CG33196-PZ 13144..13562 60..429 730 36.5 Plus
dp-PZ 15998 CG33196-PZ 8157..8564 67..430 728 35.5 Plus
dp-PZ 15998 CG33196-PZ 4094..4519 67..441 726 34.9 Plus
dp-PZ 15998 CG33196-PZ 7377..7824 32..436 725 34.7 Plus
dp-PZ 15998 CG33196-PZ 9291..9740 33..437 725 34.6 Plus
dp-PZ 15998 CG33196-PZ 5375..5800 67..436 724 34.2 Plus
dp-PZ 15998 CG33196-PZ 10909..11323 63..429 724 35.5 Plus
dp-PZ 15998 CG33196-PZ 8784..9206 56..436 720 36.1 Plus
dp-PZ 15998 CG33196-PZ 9430..9842 67..433 720 36.3 Plus
dp-PZ 15998 CG33196-PZ 10382..10796 67..429 719 36.4 Plus
dp-PZ 15998 CG33196-PZ 6085..6540 20..429 717 33.7 Plus
dp-PZ 15998 CG33196-PZ 7832..8249 67..430 717 35 Plus
dp-PZ 15998 CG33196-PZ 4497..4932 43..429 713 34.4 Plus
dp-PZ 15998 CG33196-PZ 7627..8030 67..429 713 35.2 Plus
dp-PZ 15998 CG33196-PZ 4841..5258 67..436 712 35.7 Plus
dp-PZ 15998 CG33196-PZ 5594..6005 67..429 712 37 Plus
dp-PZ 15998 CG33196-PZ 5908..6328 61..429 711 36.9 Plus
dp-PZ 15998 CG33196-PZ 8016..8463 33..437 711 34.1 Plus
dp-PZ 15998 CG33196-PZ 11342..11751 67..431 709 36.4 Plus
dp-PZ 15998 CG33196-PZ 10174..10580 67..431 708 34.8 Plus
dp-PZ 15998 CG33196-PZ 12076..12498 55..433 706 33.8 Plus
dp-PZ 15998 CG33196-PZ 9540..9944 67..429 703 34.7 Plus
dp-PZ 15998 CG33196-PZ 10274..10684 67..429 700 36 Plus
dp-PZ 15998 CG33196-PZ 10486..10901 67..429 698 35 Plus
dp-PZ 15998 CG33196-PZ 5270..5695 67..437 697 35.7 Plus
dp-PZ 15998 CG33196-PZ 5476..5897 52..429 696 34.5 Plus
dp-PZ 15998 CG33196-PZ 13793..14171 67..436 695 37.7 Plus
dp-PZ 15998 CG33196-PZ 6986..7394 67..431 694 35.1 Plus
dp-PZ 15998 CG33196-PZ 12496..12923 51..431 693 36 Plus
dp-PZ 15998 CG33196-PZ 6648..7075 55..430 692 34 Plus
dp-PZ 15998 CG33196-PZ 6757..7179 55..429 692 35.3 Plus
dp-PZ 15998 CG33196-PZ 5052..5467 67..429 685 33.9 Plus