BO25965.complete Sequence
1333 bp assembled on 2010-06-29
GenBank Submission: KX796347
> BO25965.complete
GAAGTTATCAGTCGACATGAAGAACCGCCAGCGAACGCGCCGAATATCGC
TAAATGAAAACCACAACAGATACATGGGCAGCGGCGGCATCGATGTACAA
ATAGTTACCAATACAAAGGAGCCCAATCAAGTCAATTTAAATTCATCGTC
AGCCACGACGACCTCAGCGGAGGCTGCTCTGCCCGCTTCGCTTCCACTTG
CTCAGATAGCGCAGCAGCCACATACCCATCCCCATCCCCATCCCAATCCC
CATCTCCACCAGCAACACCAGCTGATTGTGACGCCCACAACGATGACGGG
CAAGTATCATCCAGCGCACGCCAAGCTGCGAAGATGCAAATCGACGCCGA
GTCTCAATTGCGATGGCATGGCGGAGCCCATGGAGGAGGACCAGCTCCAT
CGCTTTGCAGCATGCTCACGTAACCCCGCCGCGGAGGCTCAGCAGCATGC
ACAGCCATCGTGCAACAGCAGCAGCAGCAGCAGCGACGGCAGCTGCAACA
GCAACAAGTGCAGCAGCAACATCTGCGGTGCGCAGCCAACAACTCCGGAG
TCATTGCGCTTCGGATGCGCTCACTACAAGCGGCGGGCCATGTTCGTGAC
CCCCTGCTGCAACAAGTTCTACAAGTGCCGATTTTGCCACGACGAGAACG
AGACGCATCACTTCGATCGCAAAACGCTCACCGAACTAATATGCTCCGAG
TGCAATACGCGGCAAACGGTGCGGGAGCAGTGCCTCAATTGCGGCGTGAG
ATTTGGTAAGTACACCTGCCTGATCTGCAACCTCTTCGATGATGCGGACA
AGCAGCAGTACCATTGTCATGGATGTGGGATTTGTCGCATTGGCGGTGCG
GAGAACTTCTTCCACTGCGAGGTGTGCAACATGTGCCTACCTATTCAGCT
GAAGATCGATGGCCACCGGTGCGTGGAGAACATCTCGCGATCGCACTGCC
CCGTGTGCCTGGGCGACATCCACACTTCGCGCATACCCTGCCACATTCCC
GACTGCGGACACCTGCTGCACAAGATGTGCTTCGACCAGCTGCTGGCCTC
CGGCCACTACACCTGTCCCACCTGCCAGACCTCGCTGATCGATATGACGG
CGCTGTGGGTATACTTGGACGACCAGGCGGAGCGCATGCCGGTGCCACTG
AAGTACGAGAATCAGCGAGTGCACATATTCTGCAACGATTGTCACAAGAC
TTCAAAAACCAAATTCCATTTCATCGGACTAAAGTGCGTCCATTGCGGCG
CCTACAATACAACGCAGGATGTTAAACGCCGCCTGTCCCTGGTCACCGAT
GAACCATCCTCGGCGGCAAGCTTTCTAGACCAT
BO25965.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:35:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16947-RB | 1302 | CG16947-PB | 1..1299 | 17..1315 | 6495 | 100 | Plus |
| CG16947-RA | 1302 | CG16947-PA | 1..1299 | 17..1315 | 6495 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:35:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16947-RB | 1927 | CG16947-RB | 416..1714 | 17..1315 | 6495 | 100 | Plus |
| CG16947-RA | 2252 | CG16947-RA | 438..1736 | 17..1315 | 6495 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:35:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6463262..6463843 | 598..17 | 2910 | 100 | Minus |
| 2L | 23513712 | 2L | 6459716..6459995 | 1198..919 | 1400 | 100 | Minus |
| 2L | 23513712 | 2L | 6460555..6460717 | 760..598 | 815 | 100 | Minus |
| 2L | 23513712 | 2L | 6460323..6460483 | 919..759 | 805 | 100 | Minus |
| 2L | 23513712 | 2L | 6459531..6459649 | 1315..1197 | 595 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:35:18 has no hits.
BO25965.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-29 17:46:07 Download gff for
BO25965.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16947-RA | 1..1299 | 17..1317 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:38:02 Download gff for
BO25965.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16947-RA | 438..1736 | 17..1317 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:56:11 Download gff for
BO25965.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16947-RA | 438..1736 | 17..1317 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:56:11 Download gff for
BO25965.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6459528..6459647 | 1199..1317 | 98 | <- | Minus |
| 2L | 6459716..6459994 | 920..1198 | 100 | <- | Minus |
| 2L | 6460323..6460481 | 761..919 | 100 | <- | Minus |
| 2L | 6460555..6460716 | 599..760 | 100 | <- | Minus |
| 2L | 6463262..6463843 | 17..598 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:38:02 Download gff for
BO25965.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6459528..6459647 | 1199..1317 | 98 | <- | Minus |
| arm_2L | 6459716..6459994 | 920..1198 | 100 | <- | Minus |
| arm_2L | 6460323..6460481 | 761..919 | 100 | <- | Minus |
| arm_2L | 6460555..6460716 | 599..760 | 100 | <- | Minus |
| arm_2L | 6463262..6463843 | 17..598 | 100 | | Minus |
BO25965.pep Sequence
Translation from 16 to 1333
> BO25965.pep
MKNRQRTRRISLNENHNRYMGSGGIDVQIVTNTKEPNQVNLNSSSATTTS
AEAALPASLPLAQIAQQPHTHPHPHPNPHLHQQHQLIVTPTTMTGKYHPA
HAKLRRCKSTPSLNCDGMAEPMEEDQLHRFAACSRNPAAEAQQHAQPSCN
SSSSSSDGSCNSNKCSSNICGAQPTTPESLRFGCAHYKRRAMFVTPCCNK
FYKCRFCHDENETHHFDRKTLTELICSECNTRQTVREQCLNCGVRFGKYT
CLICNLFDDADKQQYHCHGCGICRIGGAENFFHCEVCNMCLPIQLKIDGH
RCVENISRSHCPVCLGDIHTSRIPCHIPDCGHLLHKMCFDQLLASGHYTC
PTCQTSLIDMTALWVYLDDQAERMPVPLKYENQRVHIFCNDCHKTSKTKF
HFIGLKCVHCGAYNTTQDVKRRLSLVTDEPSSAASFLDH
BO25965.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:26:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16947-PB | 433 | CG16947-PB | 1..433 | 1..433 | 2431 | 100 | Plus |
| CG16947-PA | 433 | CG16947-PA | 1..433 | 1..433 | 2431 | 100 | Plus |
