BO25970.complete Sequence
3181 bp assembled on 2010-07-15
GenBank Submission: KX800116
> BO25970.complete
GAAGTTATCAGTCGACATGGAGGCACAAAAACTCACGGAACTGTTGCGCG
CAACTATTGATCCGAATCCGGAACAGCGCAAGGCGGCCGAGGATCAACTG
GCCCAGATACACAAAATCATCGGATTTGTGCCCACCATACTGCAGATCGT
TATGCAGACGACGGTGGAACAGCCGGTGCGCCAGGCCGGTGCTGTCTACC
TCAAGAATCTGATCAACAGCAGCTGGTCGGACCACGAGGCCAAGCCTGGA
GAGCCAATACCCTTCTCTATACACGAACAGGATCGGGCTATGATCCGTGG
CGCTATTGTAGATGCTATTGTGCACGCCCCCGAGTTGATTAGGGTCCAGT
TGTCTGTCTGCGTCAATCACATCATTAAAAGCGATTTCCCTGGACGCTGG
CCACAGGTGGTGGATAGCATCAGCATATATCTGCAAAACCAGGATGTCAA
CGGCTGGAACGGAGCTCTGGTAACCATGTACCAGCTGGTCAAGACCTACG
AGTACAAGCGGCATGAGGAGAGGACGCCGCTAAACGAGGCAATGAACCTA
CTGTTGCCCATGATCTACCAGCTGATGGTCCGACTGCTGGCAGAGCAGTC
CGAGCAATCTGTGCTGCTACAAAAGCAAATTCTCAAGATCTACTATGCCC
TCACGCAATACACCCTTCCACTGGACCTCATTACCAAGGAGATCTTCTCG
CAGTGGATGGAGATCTGTCGTCAGGTGGCTGATCGCGCAGTGCCCGATAG
CTCGCACCTGGACGATGATGAGCGAACGGAGTTCCCCTACTGGAAGACTA
AGAAGTGGGCCCTGCACATCATGGTTCGCATGTTCGAGCGTTATGGCAGT
CCCAGCAATGTGGTTAGTGAAAAATACCAAAAATTCGCAGAGTGGTATCT
GCCCACGTTTAGCCAGGGCGTGCTGGAGGTGCTCCTCAAGATCCTCGACC
AGTACCGAAACAGAGTCTACGTCTCACCACGCGTCCTCACTGATGTGCTC
AACTATCTGAAGAATGCGGTTAGCCACGCCTACACCTGGAAGCTGATTAA
GCCTCACATGGTGGCTGTCATCCAGGACGTGATCTTTCCCATCATGTCGT
TTACTGACTCCGATCAGGAGCTCTGGGAAAGCGATCCCTACGAGTACATT
CGCCTTAAGTTCGATATCTTTGAGGATTATGCCACACCTGTACCGGCAGC
CCAATCTCTGCTGCATTCTATGTGCAAAAAGCGCAAGGGCATTTTGCCCA
AGGCAATGGCCACAATTATGCAGATAATTACATCGCCGAATGCGGACAAC
AAACAGAAAGATGGTGCCTTGCACATGATTGGAACGCTGGCGGACGTACT
GCTGAAGAAGGCTTCGTACCGCGACCAAGTGGAGTCCATGCTGACCACCT
ACGTCTTCCCAGAATTCCAAAATCCCGCGGGCCACATGAGAGCGCGCGCG
TGCTGGGTGCTGCACTATTTCTGTGACGTTCAAATCAAGAATCCCCAAGT
GCTGGCCGAGATAATGCGTCTGACCACAAACGCCTTGCTTACCGACAAGG
AGCTGCCCGTCAAAGTGGAGGCAGCTATCGGTCTGCAGATGTTCATATCG
TCCCAGGACGAGGCGCCGCAATACGTGGAGGCACAGATCAAGGAGATCAC
CAAGGAGCTGCTTACCATCATTCGAGAGACGGAGAACGAAGATCTAACAA
ACGTTATGCAAAAGATCGTGTGCACCTTCACCGAGCAATTGCTGCCCGTG
GCCACCGAGATCTGCCAGCACCTGGCCACCACCTTCAGCCAGGTCCTAGA
ATCTGAGGAGGGATCCGACGAGAAGGCCATCACGGCCATGAGTCTGCTTA
ACACTATCGAAACTCTGCTCAGTGTGATGGAAGAGCATCCTGATGTCCTG
CTTAACTTGCACCCGATCGTCATTAATGTTGTCGGACACATTTTCCAGCA
CAACATAACTGACTTCTATGAGGAAACCTTCTCCCTGGTCTACGACCTGA
CAGCCAAGGCCATTTCCCCCGAAATGTGGCAGATGCTGGAGCTCATCTAT
CAGGTGTTCAAGAAGGACGGTATTGACTACTTTATCGACATTATGCCTGC
TCTGCATAACTATGTGACGGTCGACACGCCCGCTTTCCTCTCCAATCCCA
ACAGGCTGTTGGCGATTCTCGACATGTGCAAAACGATGCTTACTAGTAGC
CCTGGCGAGGATCCCGAGTGCCATGCCGCCAAACTGATGGAAGTGATTAT
CTTGCAGTGCAAGGGTCAAATCGACTCAGTGATACATATGTTCGTGGAGC
TGGCTCTGTCCCGGTTAACACGTGAAGTTCAATCCTCAGAGCTGCGCACT
ATGTGCCTGCAAGTGGTAATCGCGGCACTCTACTATAATCCCCAGTTGCT
GCTGTCCATTCTGGACAAAATGTCCCAGCAAAACAACGACTCTATCAGCG
CGCACTTTATCAAGCAGTGGCTTCACGACACGGACTGTTTCCTAGGCATC
CACGATCGCAAACTTTGCGTCCTGGGTCTGTGCACCCTCATCTCGCTGGG
CGAAGCCAAGCCCCAGGTTCTGAGCGAAGTGGCTGGAAAGATTGTGCCCG
CACTTATTTTGCTTTTCGATGGTCTAAAACGCGCCTACGAGTCTCGTGCT
CAGGAGGAAGAGGAAGATGAGGAGGAGGAGGACGGTGACGACTGTGAGGA
GGCTCTGTCCAGTGACGAGGATGACATGGACGAAATGGCACCGGACTATC
TGGATAAATTGGCCGAATTTGCCAAAACCAAGGGCAATGAGTCGGGCTTC
GAAGTGAAAGCCGAAATCAAGGACGACGATGCTGACTCGGACGGTGACGC
CGAGGAGTCTGTGGGTGATCTGAACGAGACTGGACTGGAGTCGTTTACCA
CGCCCATCGACGATGAGGAGAACGAAAGCGCCATCGATGAGTACTGGACG
TTTAAGGAAGTTATTACTGCACTTTCTGCACAAGACCAAGCCTGGTATGC
GCTGTTGACCTCCAACCTCACACCTGAGCAAGCCAAGGCGCTGCAAGAGG
TGGTGGTGACGGCTGACCAACGCAAAGCCGCCAAGGAATCGAAGCTGATC
GAGAAGCAAGGTGGCTTCGCCTTTCCGCAGACTGCCGTGCCCACGTCGTT
TAAGTTCGGCTCCGCAAGCTTTCTAGACCAT
BO25970.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:00:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| msk-RA | 3150 | CG7935-PA | 1..3147 | 17..3163 | 15735 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:00:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| msk-RA | 3979 | CG7935-RA | 262..3408 | 17..3163 | 15735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:00:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8118744..8119542 | 1163..1961 | 3995 | 100 | Plus |
| 3L | 28110227 | 3L | 8117594..8118093 | 341..840 | 2500 | 100 | Plus |
| 3L | 28110227 | 3L | 8120277..8120750 | 2496..2969 | 2370 | 100 | Plus |
| 3L | 28110227 | 3L | 8119911..8120222 | 2185..2496 | 1560 | 100 | Plus |
| 3L | 28110227 | 3L | 8117302..8117541 | 104..343 | 1200 | 100 | Plus |
| 3L | 28110227 | 3L | 8119604..8119828 | 1961..2185 | 1125 | 100 | Plus |
| 3L | 28110227 | 3L | 8120814..8121008 | 2969..3163 | 975 | 100 | Plus |
| 3L | 28110227 | 3L | 8118156..8118334 | 840..1018 | 895 | 100 | Plus |
| 3L | 28110227 | 3L | 8118547..8118692 | 1018..1163 | 730 | 100 | Plus |
| 3L | 28110227 | 3L | 8116440..8116529 | 17..106 | 450 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 05:00:43 has no hits.
BO25970.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-15 10:01:01 Download gff for
BO25970.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msk-RA | 263..3409 | 17..3165 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:05:47 Download gff for
BO25970.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msk-RA | 262..3408 | 17..3165 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:41:54 Download gff for
BO25970.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msk-RA | 262..3408 | 17..3165 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:41:54 Download gff for
BO25970.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8119912..8120222 | 2186..2496 | 100 | -> | Plus |
| 3L | 8116440..8116529 | 17..106 | 100 | -> | Plus |
| 3L | 8117305..8117540 | 107..342 | 100 | -> | Plus |
| 3L | 8117596..8118093 | 343..840 | 100 | -> | Plus |
| 3L | 8118157..8118333 | 841..1017 | 100 | -> | Plus |
| 3L | 8118547..8118692 | 1018..1163 | 100 | -> | Plus |
| 3L | 8118745..8119542 | 1164..1961 | 100 | -> | Plus |
| 3L | 8119605..8119828 | 1962..2185 | 100 | -> | Plus |
| 3L | 8120278..8120750 | 2497..2969 | 100 | -> | Plus |
| 3L | 8120815..8121008 | 2970..3165 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:05:47 Download gff for
BO25970.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8110405..8110640 | 107..342 | 100 | -> | Plus |
| arm_3L | 8109540..8109629 | 17..106 | 100 | -> | Plus |
| arm_3L | 8110696..8111193 | 343..840 | 100 | -> | Plus |
| arm_3L | 8111257..8111433 | 841..1017 | 100 | -> | Plus |
| arm_3L | 8111647..8111792 | 1018..1163 | 100 | -> | Plus |
| arm_3L | 8111845..8112642 | 1164..1961 | 100 | -> | Plus |
| arm_3L | 8112705..8112928 | 1962..2185 | 100 | -> | Plus |
| arm_3L | 8113012..8113322 | 2186..2496 | 100 | -> | Plus |
| arm_3L | 8113378..8113850 | 2497..2969 | 100 | -> | Plus |
| arm_3L | 8113915..8114108 | 2970..3165 | 98 | | Plus |
BO25970.pep Sequence
Translation from 16 to 3181
> BO25970.pep
MEAQKLTELLRATIDPNPEQRKAAEDQLAQIHKIIGFVPTILQIVMQTTV
EQPVRQAGAVYLKNLINSSWSDHEAKPGEPIPFSIHEQDRAMIRGAIVDA
IVHAPELIRVQLSVCVNHIIKSDFPGRWPQVVDSISIYLQNQDVNGWNGA
LVTMYQLVKTYEYKRHEERTPLNEAMNLLLPMIYQLMVRLLAEQSEQSVL
LQKQILKIYYALTQYTLPLDLITKEIFSQWMEICRQVADRAVPDSSHLDD
DERTEFPYWKTKKWALHIMVRMFERYGSPSNVVSEKYQKFAEWYLPTFSQ
GVLEVLLKILDQYRNRVYVSPRVLTDVLNYLKNAVSHAYTWKLIKPHMVA
VIQDVIFPIMSFTDSDQELWESDPYEYIRLKFDIFEDYATPVPAAQSLLH
SMCKKRKGILPKAMATIMQIITSPNADNKQKDGALHMIGTLADVLLKKAS
YRDQVESMLTTYVFPEFQNPAGHMRARACWVLHYFCDVQIKNPQVLAEIM
RLTTNALLTDKELPVKVEAAIGLQMFISSQDEAPQYVEAQIKEITKELLT
IIRETENEDLTNVMQKIVCTFTEQLLPVATEICQHLATTFSQVLESEEGS
DEKAITAMSLLNTIETLLSVMEEHPDVLLNLHPIVINVVGHIFQHNITDF
YEETFSLVYDLTAKAISPEMWQMLELIYQVFKKDGIDYFIDIMPALHNYV
TVDTPAFLSNPNRLLAILDMCKTMLTSSPGEDPECHAAKLMEVIILQCKG
QIDSVIHMFVELALSRLTREVQSSELRTMCLQVVIAALYYNPQLLLSILD
KMSQQNNDSISAHFIKQWLHDTDCFLGIHDRKLCVLGLCTLISLGEAKPQ
VLSEVAGKIVPALILLFDGLKRAYESRAQEEEEDEEEEDGDDCEEALSSD
EDDMDEMAPDYLDKLAEFAKTKGNESGFEVKAEIKDDDADSDGDAEESVG
DLNETGLESFTTPIDDEENESAIDEYWTFKEVITALSAQDQAWYALLTSN
LTPEQAKALQEVVVTADQRKAAKESKLIEKQGGFAFPQTAVPTSFKFGSA
SFLDH
BO25970.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:32:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| msk-PA | 1049 | CG7935-PA | 1..1049 | 1..1049 | 5398 | 100 | Plus |
| Cas-PA | 975 | CG13281-PA | 9..681 | 4..685 | 291 | 22 | Plus |
