BO25982.complete Sequence
2422 bp assembled on 2010-07-15
GenBank Submission: KX794769
> BO25982.complete
GAAGTTATCAGTCGACATGACGGAAAGCGTGGAGCTGATGAACAAGTACG
GCGAGCCACTGCGCTACGACCGGAACTTCACGGGACCGAGGCAGAGGGAT
CGCAGCTGCACGGATGTGCCCTGCCTGCTGTTATTCGTCCTCTTCCTGGG
CGGATGGGCCTTCATAGCCCAATACGCCATCAGGAACGGCGATCTCAACA
AACTGCTGGTGCCCACGGACTCCTTTAACCGAAAGTGTGGCATGGACTCC
GGAGTGCTGAACAAGAAAAACCTATTCTTTTTCGACTTGAATCAGTGCAT
CGATCCACTTGTACCCATCACTGGATGTGACACTCCACAGGTTTGTGTGG
AGACTTGTCCCCGAGAGACGTTCGTCTGGGACACTATGAAGGACAAACAA
AGTTTTGCGGAGCTGCATAGTCGCCTCATCTGCTTGTCGGAGGAGCACAA
GGCGCAGATTCGCACCAAATCGGACATTCAGGATGCCATTAACCAGAACC
AGTGCGCACGCTGGTACATCAAGAGTGCTCCATTCCTCAAACGATGCCTC
TTCGAGTTCTCGCAGGGCGTGTGTGATTATATTCCCTCGTTTCTGCTAAA
TGGGGGAAGGTCGAGGCGGGAGCTGCATATGTTGCCCGGAAACGCCACCA
CAGAAGTTCAAATGCAGGCCGATGTCATGTACCAGAAAATGACGGATGCC
CAGGCTCTCGTTGTTCCACAGGCGAATGGCAAACAGACTCCAGTGGACGA
GGAACCGATCATCCAGTGCAAGCGCAGACTCAACGAGGCTGTCATCAAGG
AGAAGATGATGCAGACCGATACGAGGCTGGCCAAGCTCGTTGGTAACATG
GTGGCCCACTTCTACAATGGCACAAACGACGCCCAGCTTTTGGGAGAAAA
GATTGTCGAGGATCTTGTCAACTCCTGGTCGATCGTTTTGGTGGCTTGCT
TCTGCACCCTGGTAGCCTCACTGATCTACATCGCTCTAATGCGCTGGCTC
TCGGCTCCGATTCTCTGGTTCTCCATCTTCGGCGTGCTTATCGGCTTGCT
GGTGGGTATTTACTTCTCCGTAAAGCAGTACATCCACTGGGAGAATACGC
CTACGGTTCCCGTACACGGCTTGAATCTACACTCCACGGTCAAGAATGTC
CTGCAAAACCAGAACACCTGGCTCTACCTGTCCATCTTCGTAGGCGTGTG
CTTCGTGGTTATCCTGTTGCTGGTAATTGTGCTAAGAAAGCGCATCCGGA
TAGCGATCGCCCTAACCAAGGAGGGCAGCAAGGCGGTGAGCAGCGTGATC
AGCACCGTGTTCTTTCCCATCTTCTCCTGGATACTCTTCATTGCCGCCAT
AGCGTTTGCCATTGGCGTGGGCCTGTATCTGGGCTCAATTGGCGATCCTT
CGTTTAGAATGGTGCGACAGCTGACGAAAAGTGGCGAAGTGACCACCGAG
GACTGCGTCTGCGAAGGTCCAGCCATCAACTACACAGTGGGCGGATCCTG
CAAGCCAGAAGTGTTCCAGCAATATTGTAGCGTTCGGCTGACCTCATTTT
TCCAGAACCGAAACCCTTGCTTGAACACCACCTGCAGCTTTGACTCGATT
AACAATCCAATCGAGATTAAGTGGGCCATCTTCTACAACGTCTTTGGCTT
CCTCTGGCTGAGCTTCTTCATCTCCGCCTTCAGCTACATGGTGCTGGCCT
CGACCTTCGCCCGATGGTACTGGACCTTCAAAAAGAGGGATGTGCCCTAC
TTCACCCTTACAAGGGCATTCTTTCAAACTGCTGTCTACCATCTGGGCAC
CGTGGCCTTTGGTTCGCTCATCCTGGCCATCGTCCGGCTGATCCGTCTGG
TGCTGGAGTACATCCACGAGAAGCTGAAGAAGTACGACAATGCGGTGACA
CGAGCCATCCTCTGCTGCATGCGCTGCTTCTTCTGGTTGCTGGAGACCTT
CCTGAAGTTCCTCAATCGGAATGCCTACATCATGTGCGCCATTCATGGCA
AGAACTTCTGCTCCAGTGCCGCGGACTCGTTTAATCTGATTATGAGGAAC
TTCCTGCGTGTGGTGACGCTGGATCAGGTCACGGACTTTTTGTTCTTTTT
GTCGAAACTGCTGCTAACCGCAGGGGCGGGGGCGTCCACCTACTACTTCC
TGGACAATAATCCGAGCATTATTCGGCTAAATTACATAGCAGTGCCCACC
ACGGTGGTGGTAATTGCCGCCTTTCTCATAACGAGCGTGTTTTTCGGTGT
GTACTCGACGGCAGTGGACACACTGTTTCTGTGCTTCCTGGAGGACTGCG
AGCGCAACGACGGCTCACCGGAGAAGCCGTTCTTCATGTCCAAGCAGCTA
ATGAAGATTCTTGGCAAGAAGAACAATCTGCCGCCGCGTCAGCGCCGCGG
AAAGGCAAGCTTTCTAGACCAT
BO25982.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:01:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11880-RC | 2391 | CG11880-PC | 1..2388 | 17..2404 | 11940 | 100 | Plus |
| CG11880-RB | 2391 | CG11880-PB | 1..2388 | 17..2404 | 11940 | 100 | Plus |
| CG11880-RA | 2391 | CG11880-PA | 1..2388 | 17..2404 | 11940 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:01:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11880-RC | 3162 | CG11880-RC | 398..2785 | 17..2404 | 11940 | 100 | Plus |
| CG11880-RB | 3463 | CG11880-RB | 699..3086 | 17..2404 | 11940 | 100 | Plus |
| CG11880-RA | 3195 | CG11880-RA | 431..2818 | 17..2404 | 11940 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:01:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29125803..29127870 | 337..2404 | 10340 | 100 | Plus |
| 3R | 32079331 | 3R | 29125414..29125739 | 17..342 | 1630 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 05:01:15 has no hits.
BO25982.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-15 10:01:03 Download gff for
BO25982.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11880-RC | 398..2785 | 17..2406 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:05:51 Download gff for
BO25982.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11880-RA | 431..2818 | 17..2406 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:42:06 Download gff for
BO25982.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11880-RA | 431..2818 | 17..2406 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:42:06 Download gff for
BO25982.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29125414..29125737 | 17..340 | 100 | -> | Plus |
| 3R | 29125807..29127870 | 341..2406 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:05:51 Download gff for
BO25982.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24951136..24951459 | 17..340 | 100 | -> | Plus |
| arm_3R | 24951529..24953592 | 341..2406 | 99 | | Plus |
BO25982.pep Sequence
Translation from 16 to 2422
> BO25982.pep
MTESVELMNKYGEPLRYDRNFTGPRQRDRSCTDVPCLLLFVLFLGGWAFI
AQYAIRNGDLNKLLVPTDSFNRKCGMDSGVLNKKNLFFFDLNQCIDPLVP
ITGCDTPQVCVETCPRETFVWDTMKDKQSFAELHSRLICLSEEHKAQIRT
KSDIQDAINQNQCARWYIKSAPFLKRCLFEFSQGVCDYIPSFLLNGGRSR
RELHMLPGNATTEVQMQADVMYQKMTDAQALVVPQANGKQTPVDEEPIIQ
CKRRLNEAVIKEKMMQTDTRLAKLVGNMVAHFYNGTNDAQLLGEKIVEDL
VNSWSIVLVACFCTLVASLIYIALMRWLSAPILWFSIFGVLIGLLVGIYF
SVKQYIHWENTPTVPVHGLNLHSTVKNVLQNQNTWLYLSIFVGVCFVVIL
LLVIVLRKRIRIAIALTKEGSKAVSSVISTVFFPIFSWILFIAAIAFAIG
VGLYLGSIGDPSFRMVRQLTKSGEVTTEDCVCEGPAINYTVGGSCKPEVF
QQYCSVRLTSFFQNRNPCLNTTCSFDSINNPIEIKWAIFYNVFGFLWLSF
FISAFSYMVLASTFARWYWTFKKRDVPYFTLTRAFFQTAVYHLGTVAFGS
LILAIVRLIRLVLEYIHEKLKKYDNAVTRAILCCMRCFFWLLETFLKFLN
RNAYIMCAIHGKNFCSSAADSFNLIMRNFLRVVTLDQVTDFLFFLSKLLL
TAGAGASTYYFLDNNPSIIRLNYIAVPTTVVVIAAFLITSVFFGVYSTAV
DTLFLCFLEDCERNDGSPEKPFFMSKQLMKILGKKNNLPPRQRRGKASFL
DH
BO25982.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:32:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11880-PC | 796 | CG11880-PC | 1..796 | 1..796 | 4188 | 100 | Plus |
| CG11880-PB | 796 | CG11880-PB | 1..796 | 1..796 | 4188 | 100 | Plus |
| CG11880-PA | 796 | CG11880-PA | 1..796 | 1..796 | 4188 | 100 | Plus |
| CG1311-PB | 686 | CG1311-PB | 175..645 | 273..785 | 507 | 26 | Plus |
| CG1311-PA | 691 | CG1311-PA | 175..650 | 273..785 | 504 | 25.6 | Plus |
