BO25989.complete Sequence
664 bp assembled on 2010-06-29
GenBank Submission: KX799223
> BO25989.complete
GAAGTTATCAGTCGACATGCAGCGTTCGTCTTATCCTCTATGCCACATTG
TGCGACCCAGCTTGACTGGGCTTTTAGGCGGCGGATGGATTGACCTTCGA
AGGACTATGGCCTCAGATTCGTGGGGACGGGGTGACGGCAATAGCCAGCC
CAATTCGCCAAGGGCTGGCGTTTCGCGTGCCAGTGCCACATCGACGGTGA
TAAGTGATGCCAGCTCCTATTCGCGTGGCGTCAACACTGGTGCTTTCGAG
CGACGCATCAATCGGGAGGATAATATGTGGAGGGATCAGAGCTATATCGA
TACAAAATGGTTAAATCCTCGCGATCCCAATGCCTATCGACCGAATTTCC
GTCAAACAGAGCCGACATCGTTGCGCAAGCAATTCATGCGCAGTCCGGAT
GAAATATCCCGTGAGGTGATGGGTCGTGATTGGGAGGAAACGGTCAGGAC
ATATAAACGCAACGCCCAGAGCAAACACAGTGTGGCGCGCACAGAGGAGC
GGCAATCTTCGGATAATACACGTAATCGCCAGCAACATTTGCAATTAATG
CACATGCAACAGCAACAAAGGCAACAGCAGCAACATAAGAAAAATCAGCA
GCAGTACAACAATTGGGGCAGGAGTGTGGAGTCCCCCGAGGATCAAGCAA
GCTTTCTAGACCAT
BO25989.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:34:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1999-RA | 633 | CG1999-PA | 1..630 | 17..646 | 3150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:34:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1999-RA | 1091 | CG1999-RA | 164..794 | 16..646 | 3155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:34:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7359131..7359761 | 16..646 | 3155 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 14:34:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..6856 | 530..624 | 180 | 69.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6838 | 530..624 | 178 | 68.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6791..6873 | 530..611 | 178 | 69.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2290..2471 | 421..612 | 171 | 58.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1533..1616 | 530..614 | 170 | 68.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2243..2387 | 467..612 | 168 | 60.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2352..2441 | 530..621 | 167 | 66.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6727..6807 | 541..623 | 167 | 70.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6803..6888 | 530..611 | 167 | 70.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2765..2837 | 529..604 | 166 | 71.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1073..1153 | 530..612 | 158 | 69 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6710..6786 | 548..623 | 157 | 68.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2297..2356 | 547..606 | 156 | 73.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6823 | 530..624 | 155 | 64.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2581..2656 | 542..620 | 154 | 71.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2367..2462 | 530..624 | 153 | 63.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2580..2681 | 509..613 | 150 | 64.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2415..2492 | 530..612 | 142 | 67.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2429..2516 | 520..612 | 138 | 66 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1061..1116 | 557..611 | 133 | 73.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2805..2872 | 557..626 | 129 | 67.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2401 | 530..611 | 128 | 65.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1097..1181 | 530..614 | 128 | 65.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1524..1593 | 542..612 | 127 | 66.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6827..6947 | 530..650 | 127 | 58.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1516..1583 | 555..624 | 120 | 65.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6858..6922 | 525..589 | 118 | 64.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1046..1162 | 492..604 | 116 | 58.1 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3279..3341 | 560..621 | 114 | 66.7 | Plus |
BO25989.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-29 17:46:04 Download gff for
BO25989.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1999-RA | 165..794 | 17..648 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:37:50 Download gff for
BO25989.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1999-RA | 165..794 | 17..648 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:55:58 Download gff for
BO25989.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1999-RA | 165..794 | 17..648 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:55:58 Download gff for
BO25989.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7359132..7359761 | 17..648 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:37:50 Download gff for
BO25989.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7253165..7253794 | 17..648 | 99 | | Plus |
BO25989.pep Sequence
Translation from 16 to 664
> BO25989.pep
MQRSSYPLCHIVRPSLTGLLGGGWIDLRRTMASDSWGRGDGNSQPNSPRA
GVSRASATSTVISDASSYSRGVNTGAFERRINREDNMWRDQSYIDTKWLN
PRDPNAYRPNFRQTEPTSLRKQFMRSPDEISREVMGRDWEETVRTYKRNA
QSKHSVARTEERQSSDNTRNRQQHLQLMHMQQQQRQQQQHKKNQQQYNNW
GRSVESPEDQASFLDH
BO25989.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:26:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1999-PA | 210 | CG1999-PA | 1..210 | 1..210 | 1122 | 100 | Plus |
