Clone BO25990 Report

Search the DGRC for BO25990

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:259
Well:90
Vector:pDNR-Dual
Associated Gene/Transcripticln-RA
Protein status:BO25990.pep: Imported from assembly
Sequenced Size:679

Clone Sequence Records

BO25990.complete Sequence

679 bp assembled on 2010-06-29

GenBank Submission: KX796668

> BO25990.complete
GAAGTTATCAGTCGACATGGTTCTTATTATGCGTGTTTCCCCGCCGGAAC
ATGGTCTGTTGTATACGGCAAACAATATCAAGCTGAAACTAGGCGACAAA
GTGGTGGGCGAAGGCACAGTTTACATTGCCCAAAACACGCTATCCTGGCA
GCCAACTGAATTGGCGGAGGGTATATCCATTGAGTGGAAGCAGGTTAGCC
TGCACGGTATCTCTTCGAATCCGAGAAAGTGCATCTACTTCATGCTGGAC
CACAAAGTCGAGTGGAACGGCGTCTACGGAGATCCTCCCCAGCAGGCAGT
CAATGGTCGGAATGGCGGTGGTTCGGAAGCGGAAGTGGACGAGGGAAATG
GCAGCGATGAGCACGATGAGGACGACAATTTCGAGGATGCCGTAGACGAG
CAATTTGGAGAGGTCACAGAGTGCTGGCTTATGCCGGAGGACATTCACAC
CGTAGACACTATGTACAGTGCCATGACGACTTGCCAGGCCCTACATCCTG
ATTCGGCAAACAGTGATTCGGAAGACAGCGATCCTATGCAGGATGCCGGT
GGCTTAGAGGATGAGGCTATGGAGGAGGATGATGCATTGACGCTTGGGCG
CAACGGCGTGCAGAATCTCAGTTTGGACGACGACGAAGAGCGATTCGAGG
ACGCTGATGAGGCAAGCTTTCTAGACCAT

BO25990.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:34:45
Subject Length Description Subject Range Query Range Score Percent Strand
icln-RA 648 CG4924-PA 1..645 17..661 3225 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:34:46
Subject Length Description Subject Range Query Range Score Percent Strand
icln-RA 832 CG4924-RA 70..714 17..661 3225 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:34:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17591238..17591763 136..661 2630 100 Plus
2R 25286936 2R 17591033..17591151 17..135 595 100 Plus
Blast to na_te.dros performed on 2014-11-26 14:34:44 has no hits.

BO25990.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-29 17:46:03 Download gff for BO25990.complete
Subject Subject Range Query Range Percent Splice Strand
icln-RA 68..712 17..663 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:37:48 Download gff for BO25990.complete
Subject Subject Range Query Range Percent Splice Strand
icln-RA 70..714 17..663 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:55:55 Download gff for BO25990.complete
Subject Subject Range Query Range Percent Splice Strand
icln-RA 70..714 17..663 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:55:55 Download gff for BO25990.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17591033..17591151 17..135 100 -> Plus
2R 17591238..17591763 136..663 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:37:48 Download gff for BO25990.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13478538..13478656 17..135 100 -> Plus
arm_2R 13478743..13479268 136..663 99   Plus

BO25990.pep Sequence

Translation from 16 to 679

> BO25990.pep
MVLIMRVSPPEHGLLYTANNIKLKLGDKVVGEGTVYIAQNTLSWQPTELA
EGISIEWKQVSLHGISSNPRKCIYFMLDHKVEWNGVYGDPPQQAVNGRNG
GGSEAEVDEGNGSDEHDEDDNFEDAVDEQFGEVTECWLMPEDIHTVDTMY
SAMTTCQALHPDSANSDSEDSDPMQDAGGLEDEAMEEDDALTLGRNGVQN
LSLDDDEERFEDADEASFLDH

BO25990.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:27:05
Subject Length Description Subject Range Query Range Score Percent Strand
icln-PA 215 CG4924-PA 1..215 1..215 1152 100 Plus