BO26001.complete Sequence
1498 bp assembled on 2010-06-30
GenBank Submission: KX794947
> BO26001.complete
GAAGTTATCAGTCGACATGGTCACGAACATGTCGCAGCCGCATTATTGCG
GCACCGGCATCGATGATTTCCACACAAACTACAAATACTTTCACGGTTAC
TTCTCGCTGATTGTCTGTATCCTGGGAACCATTGCGAATACCCTAAATAT
CATAGTGCTGACCCGACGGGAGATGCGCTCCCCCACAAATGCCATACTCA
CGGGTCTGGCTGTCGCCGATCTGGCTGTGATGCTGGAATACATACCCTAT
ACGGTGCACGACTATATCCTCAGTGTAAGGCTGCCGCGAGAGGAGCAGCT
CAGCTACAGCTGGGCGTGCTTCATCAAGTTTCACTCGGTATTTCCCCAGG
TGCTGCACACCATCTCCATTTGGCTAACGGTGACGCTGGCAGTTTGGCGG
TACATAGCGGTAAGCTATCCGCAAAGGAATCGCATCTGGTGTGGAATGCG
AACTACTCTGATCACCATAGCCACGGCCTATGTTGTCTGTGTCCTGGTAG
TGTCACCTTGGCTGTACCTAGTCACAGCCATTGCCAAGTTCCTAGAGACT
TTGGATGCCAATGGCAAGACGATTGCCTCAGTGCCATTGAGTCAATACAT
TCTGGACTACAATCGGCAGGATGAGGTGACCATGCAGGTCATGTCGAGTA
CAACGCCAGATGTTTCCTGGGCGATACCAAGTGATTCGGCCAATGGAACT
GCAGTTAGCTTGCTAAGTCTAACCACAGTGATACCCCTAACCACATTAAG
CACTGGAGTAACCACATCCTCGTCGTTGGGTGAGCGCAATGTGACTGTCT
ATAAGCTGTATCACAGCGCACTGGCGCTGCGTGATCGGCAGTTCAGGAAT
GCGACCTTCCTTATATACAGTGTCCTGATCAAGCTGATACCCTGCTTCGC
ACTGACCATTCTGTCTGTGCGGCTCATCGGTGCTCTGTTGGAGGCCAAAA
GGAGGAGGAAGATCCTGGCCTGTCATGCAGCCAACGATATGCAGCCAATT
GTCAATGGAAAGGTGGTGATTCCGACGCAACCCAAGAGCTGTAAACTGCT
GGAGAAGGAGAAGCAGACCGATCGCACCACGAGGATGCTTCTGGCGGTAC
TGCTGCTCTTCCTGGTCACCGAGTTTCCACAGGGCATTATGGGTCTGCTG
AATGTGCTCCTGGGCGATGCCTTCTTTCTGCAATGTTACCTAAAGCTGAG
TGACCTTATGGACATCTTGGCGCTTATTAATTCGAGCATCAACTTCATCC
TGTACTGTTCGATGAGCCGCCAGTTCCGGAGCACGTTCGCGCTCCTCTTC
CGTCCGCGCTGGCTGGACAAATGGCTGCCGCTGTCGCAGCACGACGGCGA
AGGGAGGGTGGGCGGAAGTGGCGGCCTGGGCGGCTACGGCGGATATGGAC
GGCAGCGGTTGCTGCACACGGATGCCGTTAGCAAGAGCATGGCCATCGAT
CTCGGGCTGACGACCCAAGTGACAAATGTGGCAAGCTTTCTAGACCAT
BO26001.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:33:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MsR2-RC | 1944 | CG43745-PC | 1..1464 | 17..1480 | 7320 | 100 | Plus |
| MsR2-RB | 1467 | CG43745-PB | 1..1464 | 17..1480 | 7320 | 100 | Plus |
| MsR2-RA | 1467 | CG43745-PA | 1..1464 | 17..1480 | 7320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:33:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MsR2-RC | 2918 | CG43745-RC | 553..2017 | 16..1480 | 7325 | 100 | Plus |
| MsR2-RB | 2918 | CG43745-RB | 553..2017 | 16..1480 | 7325 | 100 | Plus |
| MsR2-RA | 2592 | CG43745-RA | 227..1691 | 16..1480 | 7325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:33:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2298153..2299275 | 79..1201 | 5615 | 100 | Plus |
| 3L | 28110227 | 3L | 2299763..2300043 | 1200..1480 | 1405 | 100 | Plus |
| 3L | 28110227 | 3L | 2342673..2343073 | 104..504 | 1000 | 83.3 | Plus |
| 3L | 28110227 | 3L | 2343600..2343752 | 1049..1201 | 360 | 82.4 | Plus |
| 3L | 28110227 | 3L | 2297661..2297723 | 16..78 | 315 | 100 | Plus |
| 3L | 28110227 | 3L | 2343852..2343996 | 1200..1344 | 275 | 79.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:33:54 has no hits.
BO26001.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-30 17:33:23 Download gff for
BO26001.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13802-RA | 228..1691 | 17..1482 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:22:23 Download gff for
BO26001.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MsR2-RA | 228..1691 | 17..1482 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:31:45 Download gff for
BO26001.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MsR2-RA | 228..1691 | 17..1482 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:31:45 Download gff for
BO26001.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2297662..2297723 | 17..78 | 100 | -> | Plus |
| 3L | 2298153..2299273 | 79..1199 | 100 | -> | Plus |
| 3L | 2299763..2300043 | 1200..1482 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:22:23 Download gff for
BO26001.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2297662..2297723 | 17..78 | 100 | -> | Plus |
| arm_3L | 2298153..2299273 | 79..1199 | 100 | -> | Plus |
| arm_3L | 2299763..2300043 | 1200..1482 | 99 | | Plus |
BO26001.pep Sequence
Translation from 16 to 1498
> BO26001.pep
MVTNMSQPHYCGTGIDDFHTNYKYFHGYFSLIVCILGTIANTLNIIVLTR
REMRSPTNAILTGLAVADLAVMLEYIPYTVHDYILSVRLPREEQLSYSWA
CFIKFHSVFPQVLHTISIWLTVTLAVWRYIAVSYPQRNRIWCGMRTTLIT
IATAYVVCVLVVSPWLYLVTAIAKFLETLDANGKTIASVPLSQYILDYNR
QDEVTMQVMSSTTPDVSWAIPSDSANGTAVSLLSLTTVIPLTTLSTGVTT
SSSLGERNVTVYKLYHSALALRDRQFRNATFLIYSVLIKLIPCFALTILS
VRLIGALLEAKRRRKILACHAANDMQPIVNGKVVIPTQPKSCKLLEKEKQ
TDRTTRMLLAVLLLFLVTEFPQGIMGLLNVLLGDAFFLQCYLKLSDLMDI
LALINSSINFILYCSMSRQFRSTFALLFRPRWLDKWLPLSQHDGEGRVGG
SGGLGGYGGYGRQRLLHTDAVSKSMAIDLGLTTQVTNVASFLDH
BO26001.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:10:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MsR2-PC | 647 | CG43745-PC | 1..488 | 1..488 | 2505 | 100 | Plus |
| MsR2-PB | 488 | CG43745-PB | 1..488 | 1..488 | 2505 | 100 | Plus |
| MsR2-PA | 488 | CG43745-PA | 1..488 | 1..488 | 2505 | 100 | Plus |
| MsR1-PA | 478 | CG8985-PA | 6..439 | 4..443 | 1523 | 68.8 | Plus |
| MsR1-PB | 556 | CG8985-PB | 6..439 | 4..443 | 1523 | 68.8 | Plus |
