BO26013.complete Sequence
2161 bp assembled on 2010-07-15
GenBank Submission: KX796623
> BO26013.complete
GAAGTTATCAGTCGACATGGACGAAGATATCCTAAACGCTGTGGAGTCCC
TGTTCGGCAAGGATGTCAAGATTGTGGACTGCGAAACCTCATCCTCGCTG
CAGCAGGAGGAGGTGTTGCTGGTCAACGGAGTGCCGGTGAAGCTGGATGG
GCTGCCGGCGGATGATGCCAGTGCCATAAAGGCAGCTTTGCTGGAGGGGC
AGATGCCATCGGTTGAGCACCTGAATCAATTGCTCTTCCGCGCCGGATTG
GCCCAACAGCCCATCGAGGTAGAGACCTCGTTGACCGTCAAGTCCTCTCT
GACCACCACGGAGGAGGTGCTGGTCTCGCGCAACGGACAAATCCTAGACG
AACGCACCGTGGAGACCAAGGAAAACTTTAACCATCAGTCGCACCAGAAA
GAGATCTGGCATCCTGTCAAGCAGCAGTCGGCCTTGGCGCGTGCCACTCC
CGAGAATGCCCTCAAATACCGAACCACTTCGAATTCCACGTTCGCATCGC
AGGCCACAGACTCGGACGAGCGTCCAGTTGATCCTTTGGGCCGGCAGCTG
AACCAAACCTTCTCGAATGCTTCCCTTATGTCCAGCAGCTCTGCTATTAC
TGGATCCGATCAGGTCATCGGATCTGTATCATCCACCACTATTGGGGACA
AAAGCTCGAATATAAGCAGCTGCGACTCCGGGCACGATGGCCTCTTCCAC
AGCGTGTCGATGAGTGCACCCTGGTCACATCCACGTGACACCTTAACCGA
CTCTTTGTACTGCGACATTCCCAGCTCCGCAGATGAGTCGGATGCGGTTT
CTATCCTAAACACCCACTTGAAGATCACAGAGCCATTCGATTGCCAAACA
GCGCCAGTTTACGCCAAAGACATACCCAAGAAGGGCAACCTGGATTCGGT
GGTCAACCTGCTTATCAATAATAATACTAAGGATTTGCGGTTTGCCTTTC
TGACCACTTCCCGCTTGTTTTCACCACCACACCAGCTGCTTTCCAAAATC
ATTGCCAAGATTGATAATGAGGAGGAAAACGTGTTACGACTTTTGAACGA
ATGGCTAGACACCTGTCCCGGGGACTTTAGCCATGAACTGCTATTGCAGG
AGCTGGAAAATAAGCGTAATGTAAAAGGATTGGCAGCTTTTTTGGATGGA
ATTCCCCAAGCTTTGGCGCAAAAGGACGAAAATGGACGAAGTCAACTAAA
TAACCTGCTTACCAAGCAATCGTCGGCCAGCTCGTTGGGACGTCAGAGCA
GTATTAAGTCGCTGAAACGCTTTGCCGCCAATGTCTACAAAACAGACAAT
GTGCTAAACAACTGCAGCAGTGCCTTCGAGTTGGCTCACCAACTTTATGC
CATCGAGTACGCCTATCTGTCACAAATACGTCTTGAGGAGTTTGTGGAAA
TCCTCGAAAAGGATGAGCTGAAGACCTGCATAAGCCAAACCAAGGCGGGC
ACCTTGGGTTCGAATTGCATCAGCCAGGTGACAATCGACAGTTACGTGCA
GTGGTTCAACCAGCTAAGCTACTTGACTGCAACGGAAATATTAAAGTTGG
GCAAAAAGTCCCAGAGAGCACAAATGATCGACTTCTGGGTGGAAACAGCT
CTGGAATGCTTTAACACAGGCAACTTCAACAGCTTGATGGCCATTCTAAC
AGCATTGAATCTTACTGCCATAGCTCGCCTAAAGAAAACGTGGGCCAAAG
TGCAGACGACAAAGTTCGAGGGTTTGGAGCATCAAATGGATCCCAGTTCG
AACTTTCTTAACTACAGATCCACCATGAAGGCAGCTGTTTGGCGTTCGGA
AAGGGAAATGGCCAACGAAATTGAGCGTGCCATCATCCCATTCTTCTCGC
TGTTCCTCAAAGATTTGCATGCCATTAACGAGAGCCATGAAACAAAATTG
GCCAACGGATACATAAACTTTGAGAAGTGCCTTCATTTGGGCACCCAGCT
GCGGAATTTTGGCAAATGGCAGCGATTGGACTGTCCATACGAGCAGTTGC
CTAGTGTGGTGTCCTACCTGTTGAAGGCGGAGGTGCTGAGCGAGGATCTT
TTGATGAAGGCCTCCTACGAAAGCGAGCCACCCGAGACCGGCGAGGAGAA
GGATCACTACAAGACGTTGAAAGCTGCAAGGAAATCGAACACAGCAAGCT
TTCTAGACCAT
BO26013.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:03:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4853-RB | 2130 | CG4853-PB | 1..2127 | 17..2143 | 10620 | 100 | Plus |
| CG4853-RA | 2130 | CG4853-PA | 1..2127 | 17..2143 | 10620 | 100 | Plus |
| CG4853-RC | 2115 | CG4853-PC | 1..2112 | 17..2143 | 10360 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:03:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4853-RB | 2992 | CG4853-RB | 521..2648 | 16..2143 | 10625 | 100 | Plus |
| CG4853-RA | 2829 | CG4853-RA | 358..2485 | 16..2143 | 10625 | 100 | Plus |
| CG4853-RC | 2814 | CG4853-RC | 358..2470 | 16..2143 | 10365 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:03:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17514737..17515529 | 16..808 | 3950 | 99.9 | Plus |
| 2R | 25286936 | 2R | 17515585..17516322 | 809..1546 | 3690 | 100 | Plus |
| 2R | 25286936 | 2R | 17516855..17517101 | 1897..2143 | 1235 | 100 | Plus |
| 2R | 25286936 | 2R | 17516584..17516790 | 1690..1896 | 1035 | 100 | Plus |
| 2R | 25286936 | 2R | 17516383..17516528 | 1545..1690 | 730 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 05:03:04 has no hits.
BO26013.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-15 10:01:10 Download gff for
BO26013.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4853-RB | 489..2615 | 17..2145 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:06:05 Download gff for
BO26013.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4853-RA | 359..2485 | 17..2145 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:42:43 Download gff for
BO26013.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4853-RA | 359..2485 | 17..2145 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:42:43 Download gff for
BO26013.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17514738..17515529 | 17..808 | 99 | -> | Plus |
| 2R | 17515585..17516322 | 809..1546 | 100 | -> | Plus |
| 2R | 17516385..17516528 | 1547..1690 | 100 | -> | Plus |
| 2R | 17516585..17516790 | 1691..1896 | 100 | -> | Plus |
| 2R | 17516855..17517101 | 1897..2145 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:06:05 Download gff for
BO26013.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13404360..13404606 | 1897..2145 | 99 | | Plus |
| arm_2R | 13402243..13403034 | 17..808 | 99 | -> | Plus |
| arm_2R | 13403090..13403827 | 809..1546 | 100 | -> | Plus |
| arm_2R | 13403890..13404033 | 1547..1690 | 100 | -> | Plus |
| arm_2R | 13404090..13404295 | 1691..1896 | 100 | -> | Plus |
BO26013.pep Sequence
Translation from 16 to 2161
> BO26013.pep
MDEDILNAVESLFGKDVKIVDCETSSSLQQEEVLLVNGVPVKLDGLPADD
ASAIKAALLEGQMPSVEHLNQLLFRAGLAQQPIEVETSLTVKSSLTTTEE
VLVSRNGQILDERTVETKENFNHQSHQKEIWHPVKQQSALARATPENALK
YRTTSNSTFASQATDSDERPVDPLGRQLNQTFSNASLMSSSSAITGSDQV
IGSVSSTTIGDKSSNISSCDSGHDGLFHSVSMSAPWSHPRDTLTDSLYCD
IPSSADESDAVSILNTHLKITEPFDCQTAPVYAKDIPKKGNLDSVVNLLI
NNNTKDLRFAFLTTSRLFSPPHQLLSKIIAKIDNEEENVLRLLNEWLDTC
PGDFSHELLLQELENKRNVKGLAAFLDGIPQALAQKDENGRSQLNNLLTK
QSSASSLGRQSSIKSLKRFAANVYKTDNVLNNCSSAFELAHQLYAIEYAY
LSQIRLEEFVEILEKDELKTCISQTKAGTLGSNCISQVTIDSYVQWFNQL
SYLTATEILKLGKKSQRAQMIDFWVETALECFNTGNFNSLMAILTALNLT
AIARLKKTWAKVQTTKFEGLEHQMDPSSNFLNYRSTMKAAVWRSEREMAN
EIERAIIPFFSLFLKDLHAINESHETKLANGYINFEKCLHLGTQLRNFGK
WQRLDCPYEQLPSVVSYLLKAEVLSEDLLMKASYESEPPETGEEKDHYKT
LKAARKSNTASFLDH
BO26013.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:32:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4853-PB | 709 | CG4853-PB | 1..709 | 1..709 | 3613 | 100 | Plus |
| CG4853-PA | 709 | CG4853-PA | 1..709 | 1..709 | 3613 | 100 | Plus |
| CG4853-PC | 704 | CG4853-PC | 1..704 | 1..709 | 3569 | 99.3 | Plus |
| CG7369-PA | 680 | CG7369-PA | 232..665 | 337..706 | 784 | 40.9 | Plus |
| CG34393-PB | 691 | CG34393-PB | 194..464 | 290..565 | 225 | 27.9 | Plus |
