BO26047.complete Sequence
2041 bp assembled on 2010-07-15
GenBank Submission: KX795553
> BO26047.complete
GAAGTTATCAGTCGACATGATTATGACGATGATGCAGACGGTAAGGGCAT
GGCAACAGGAATCGGATGTGGAGCACCGAAAACAACATAAGCAGCGATGG
CGACCTGATGGGGCACACATATCAGCGGCTTACGACCTCAACAGTGATAA
TGACGACGGCCACCACAGGGTGGTGCATAATCAAAACAACGGCAGCCCAA
ACAGCTCTCCGAATCAGAGCACTTCCGCCTTCCGACAGCGGCAACCGCAC
CACCCACCCACCGGACAACAACCGCCCCGGCTGCCCTGCACCGTAACCCA
CTTCTCCGCACACTGGAAAACGCTGCTCATCCTGCTCACCCTGCTCTCCG
CTTCCACGCTGACAGCCTCCGCCAATGTCACCAGCACCATCAGTCCGCCC
ATCAACGGCAGCAGCACCGATTACATCCTGCTCTATGGCGAATCCACCAC
ATCCCTTGTGCCCGCCCTGACCACCGGACTCTCGGGGGACGGAAGTGGTG
CGGTTATCGAGGACGAGGAGGATGCCGAGAAGGCCAGCGAGTACATCTTT
GATCGCACCGATGTGCGCATAATATTCATCACACTCTACACACTGGTGTT
TTGCTGCTGTTTCTTTGGTAACCTCCTTGTTATTTTGGTGGTCACATTAT
CACGACGACTGCGCTCAATAACCAACTTTTTCCTCGCCAACTTGGCGTTT
GCCGACTTCTGTGTTGGACTCTTTTGTGTGATGCAGAATCTGTCCATCTA
TCTGATAGAAAGCTGGGTCTTTGGCGAGTTCCTCTGCCGCATGTACCAGT
TTGTCCACTCCCTGAGCTACACGGCCTCCATTTTCATCCTGGTTGTCATC
TGTATGGAGCGCTACTTTGCCATCGTACACCCCATTACCTGCAAACAGAT
CCTAACTGCGGCTCGTCTGAGGATGGTCATTGTCACAGTTTGGATTACAT
CGGCAGTTTACTCCACGCCCAAGTTTGTTTTCAGCAAGACCATTAAGAAC
ATCCACACGCAGGACGGGCAGGAGGAGGAGATATGTGTCCTGGACCGTGA
GATGTTCAACTCCAAGTTGCTGGACATGATTAACTTTGTGCTTCTCTACG
TTATGCCGCTCTTGGTGATGACGGTGCTGTACAGCAAAATCGCCATCGCC
TTGTGGCGCAGTTCGCGCGGCCTCACGCCGCATGTGGTGCAGCATCAGCA
TCAGCAGCCGCAGCAGCCATCCTGCCAGGACATTGGCATGGGTATGCACA
ACAGCATGTACCATCACCATCCGCATCATCATCACCACCACCACCAGCAT
CACCAGCTGCAATCGGCGGCTTCGTCGGCAGGAGTGGTGGGAGTGGGTTT
GGGTGGTGGTGGTGGGGGCGGTCCTGGTCCGTCACTCGCTTCCGGCGGCA
GCAGCACCACGTCCTTGTCCCGCAAACAGAGCAGTAAATATGAGAAGCGC
GGCGTCAGCATCACGGAGAGCCAGCTCGATAATTGCAAGGTGTCCCTGGA
GGCCGATCGTCCCATTGTCAGTGCCTGCCGCAAGACGAGCTTCTACCACC
ACGGCCACGCCCATCACCAGCGGGCGGGCAACGCCTCAGTGGGCGGTGGC
AGCGGCGGAGCCGGGGCCGGAGCCACCCACATGTCCCACTCGTCCAGCAA
CGTCCTACGCGCCCGGCGCGGCGTTGTCCGCATGCTGATAATATTCGTGC
TGACATTCGCCCTCTGCAATCTGCCGTATCATGCCCGCAAAATGTGGCAG
TACTGGTCACGTTCGTATCGCGGTGATTCCAATTTTAATGCGCTGCTAAC
ACCGCTCACCTTTCTGGTCACGTACTTCAATTCGGGCGTAAATCCCCTAC
TCTACGCCTTCCTCAGTCGCAATTTTCGGAAGGGCATGAAGGAGCTGCTC
CTCTGCTCCTGGAAGAAGGGCAAGGGCAAGTCCTCCTCGAACTCCTCGAT
GCACCACAAGCGCAAGGCGCTGCAGACCCACTCGCTGCCCACGGACACCA
CCCACATTGGGAACGAGCAGCTAGCAAGCTTTCTAGACCAT
BO26047.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:03:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TrissinR-RB | 2010 | CG34381-PB | 1..2007 | 17..2023 | 10035 | 100 | Plus |
| TrissinR-RD | 1980 | CG34381-PD | 1..1959 | 17..1975 | 9795 | 100 | Plus |
| TrissinR-RE | 1995 | CG34381-PE | 1..1992 | 17..2023 | 9775 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:03:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TrissinR-RB | 2826 | CG34381-RB | 500..2510 | 13..2023 | 10040 | 100 | Plus |
| TrissinR-RD | 3637 | CG34381-RD | 1290..3252 | 13..1975 | 9800 | 99.9 | Plus |
| TrissinR-RE | 3601 | CG34381-RE | 1290..3285 | 13..2023 | 9780 | 99.2 | Plus |
| TrissinR-RD | 3637 | CG34381-RD | 3272..3321 | 1974..2023 | 250 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:03:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5845348..5845954 | 13..619 | 3020 | 99.8 | Plus |
| 2L | 23513712 | 2L | 5851475..5851826 | 1123..1474 | 1760 | 100 | Plus |
| 2L | 23513712 | 2L | 5852991..5853260 | 1488..1757 | 1350 | 100 | Plus |
| 2L | 23513712 | 2L | 5856098..5856318 | 1755..1975 | 1105 | 100 | Plus |
| 2L | 23513712 | 2L | 5850830..5851033 | 922..1125 | 1020 | 100 | Plus |
| 2L | 23513712 | 2L | 5850098..5850259 | 761..922 | 810 | 100 | Plus |
| 2L | 23513712 | 2L | 5848341..5848486 | 617..762 | 730 | 100 | Plus |
| 2L | 23513712 | 2L | 5856402..5856451 | 1974..2023 | 250 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 05:03:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2351..2510 | 1177..1334 | 200 | 60.9 | Plus |
BO26047.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-15 10:01:12 Download gff for
BO26047.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34381-RB | 456..2462 | 17..2025 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:06:07 Download gff for
BO26047.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TrissinR-RB | 504..2510 | 17..2025 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:43:01 Download gff for
BO26047.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TrissinR-RB | 504..2510 | 17..2025 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:43:01 Download gff for
BO26047.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5856404..5856451 | 1976..2025 | 96 | | Plus |
| 2L | 5845352..5845952 | 17..617 | 100 | -> | Plus |
| 2L | 5848342..5848486 | 618..762 | 100 | -> | Plus |
| 2L | 5850100..5850259 | 763..922 | 100 | -> | Plus |
| 2L | 5850831..5851031 | 923..1123 | 100 | -> | Plus |
| 2L | 5851476..5851826 | 1124..1474 | 100 | -> | Plus |
| 2L | 5852884..5852898 | 1475..1489 | 100 | -> | Plus |
| 2L | 5852993..5853258 | 1490..1755 | 100 | -> | Plus |
| 2L | 5856099..5856318 | 1756..1975 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:06:07 Download gff for
BO26047.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5845352..5845952 | 17..617 | 100 | -> | Plus |
| arm_2L | 5848342..5848486 | 618..762 | 100 | -> | Plus |
| arm_2L | 5850100..5850259 | 763..922 | 100 | -> | Plus |
| arm_2L | 5850831..5851031 | 923..1123 | 100 | -> | Plus |
| arm_2L | 5851476..5851826 | 1124..1474 | 100 | -> | Plus |
| arm_2L | 5852884..5852898 | 1475..1489 | 100 | -> | Plus |
| arm_2L | 5852993..5853258 | 1490..1755 | 100 | -> | Plus |
| arm_2L | 5856099..5856318 | 1756..1975 | 100 | -> | Plus |
| arm_2L | 5856404..5856451 | 1976..2025 | 96 | | Plus |
BO26047.pep Sequence
Translation from 16 to 2041
> BO26047.pep
MIMTMMQTVRAWQQESDVEHRKQHKQRWRPDGAHISAAYDLNSDNDDGHH
RVVHNQNNGSPNSSPNQSTSAFRQRQPHHPPTGQQPPRLPCTVTHFSAHW
KTLLILLTLLSASTLTASANVTSTISPPINGSSTDYILLYGESTTSLVPA
LTTGLSGDGSGAVIEDEEDAEKASEYIFDRTDVRIIFITLYTLVFCCCFF
GNLLVILVVTLSRRLRSITNFFLANLAFADFCVGLFCVMQNLSIYLIESW
VFGEFLCRMYQFVHSLSYTASIFILVVICMERYFAIVHPITCKQILTAAR
LRMVIVTVWITSAVYSTPKFVFSKTIKNIHTQDGQEEEICVLDREMFNSK
LLDMINFVLLYVMPLLVMTVLYSKIAIALWRSSRGLTPHVVQHQHQQPQQ
PSCQDIGMGMHNSMYHHHPHHHHHHHQHHQLQSAASSAGVVGVGLGGGGG
GGPGPSLASGGSSTTSLSRKQSSKYEKRGVSITESQLDNCKVSLEADRPI
VSACRKTSFYHHGHAHHQRAGNASVGGGSGGAGAGATHMSHSSSNVLRAR
RGVVRMLIIFVLTFALCNLPYHARKMWQYWSRSYRGDSNFNALLTPLTFL
VTYFNSGVNPLLYAFLSRNFRKGMKELLLCSWKKGKGKSSSNSSMHHKRK
ALQTHSLPTDTTHIGNEQLASFLDH
BO26047.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:33:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TrissinR-PB | 669 | CG34381-PB | 1..669 | 1..669 | 3542 | 100 | Plus |
| TrissinR-PE | 664 | CG34381-PE | 1..664 | 1..669 | 3496 | 99.3 | Plus |
| TrissinR-PC | 664 | CG34381-PC | 1..664 | 1..669 | 3496 | 99.3 | Plus |
| TrissinR-PD | 659 | CG34381-PD | 1..654 | 1..654 | 3456 | 99.8 | Plus |
| CCKLR-17D1-PA | 673 | CG42301-PA | 149..666 | 143..661 | 367 | 25.6 | Plus |
