BO26056.complete Sequence
1654 bp assembled on 2010-06-29
GenBank Submission: KX794600
> BO26056.complete
GAAGTTATCAGTCGACATGTTGGAGGTGGACAAGATCCTAGAGAAGTGCG
GCGACTTCAGCCGTCTGCAGATGATAATGCTTCTGCTCTTCTGTGTGATC
AACGTTCTTTCAGCCCTGCACTACTACTCCCAAACTATCATCAGCTTCGT
TCCCAAATACTGGTGTGCAGATGGTTTGCCCGCCAGCATTGAGTCTCCAG
TTGATTCGAGCTGCCTGCCATTGAACCGGAATATTAGCACTCCGAATACG
TGCTACAGCTATAACTACGAGCTATACATGGGCTACCAGAGCTTTCCCAG
CGAAATGGATTGGGTGTGCGCCGATGCCTGGAAACTCACGCTCGGCCAGT
CCATGTTCTTTGTGGGCTCTGTGGTGGGCTCTATGGTTCTGGGCTACCTG
GCGGATGTGGTTGGACGTCTGCCCATTCTGATCGTGGCCAACCTGATTGC
TATGACAGGCAATCTACTTACCATATGGAGCACCAATGTCACGCTTTTCT
GTATGTTTCGCATGATTTCCGGCATTGCTACGGATAGCAACTTTGTGATG
ATGTACATTTTGGTTATGGAGTACATGCGGCCATCGGTGCGCACCCTTGG
CCTGAGCATCTGCATTGGATTTTTCTACTGTCTAGGCTCGATGGCGGCAC
CCTGGATCGCCGTGCTCATGCGCAGCTGGCGGGGATTCCTACTGACCACC
TCCTTGCCCCTGCTGGTGGTGCCATTCTTCTACCTCATCGTGCCTGAAAG
CATTCAGTGGCTGATTTCCAAGCAGAAGTATGACAGCGCAGTTGTCTGCC
TCAAAAGGGTAGCCAAGATAAATGGACGGCACGTGGAAGAGAGTGCCTAC
GCGGAGTTCATCGAGGAGTGTAAGTGCAGTCAGCAAAACCAGAAGGCATC
ACCCCATCTACTTGATCTGTTCCAAACGCCCCGACTCCGTCGCCATACCC
TCATCCTCTTCTTCAAGTCCATGGTCATCACCCTCTGCTACGATGCGGTT
TCTCGCAACGTTCAGGGCCTTGGCATTTCGCCATTTGTGATGTTCTCGCT
GAGCGCCACCGCCATTCTGCCGGCGTGTCTGCTCATCATCGCCCTCCAAG
ATCGCATCGGTCGGAAGGCGATGGCGTCCGCCTCTCTGCTGCTGAGTGGC
ATTTTCATCTCGGTCACCGGAGGCATCATCTTTGCCGCCTCTGCATCGGA
TAAGACCACCACTTTGCTGGTAAGCCTGTCCGTAGTGGGTCGCTTTGGAG
TGACAGTGGCCTACAATTCAGGGGCGCAATATGCCACCGAGCTGATCCCC
ACCTGCGTTCGCGGACAAGGAGTTGCAGCAGTCCACGTGGCCGGCTATGC
CTTCACCTTCTTCAGTGCGTACATCCTGTTCACGAGGAGCGTATTCTCGC
CGCTACCGGAGATTATCTTGGGCGTGCTTTCCTTGCTGGGTGCGTGTCTC
TGCCTCCTGCTGCCGGAAACCCTTCACCGGACATTGCCCACTTCTTTGGA
AGATGGTGAAAATTTCGGAAAGAACGATCGGTGGTACACCTTTAGTTTTC
TGGAGGGACGAACTCAATCAGCCGCCACACTGGACACCCAAAACGCGAAA
ATGTACTCGCAGTCAACGGAATCGGCCGTCTACTTTGCAAGCTTTCTAGA
CCAT
BO26056.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:27:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7342-RB | 1623 | CG7342-PB | 1..1620 | 17..1636 | 8100 | 100 | Plus |
| CG7342-RA | 1623 | CG7342-PA | 1..1620 | 17..1636 | 8100 | 100 | Plus |
| CG6231-RF | 1758 | CG6231-PF | 985..1092 | 950..1057 | 240 | 81.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:27:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7342-RB | 2190 | CG7342-RB | 371..1990 | 17..1636 | 8100 | 100 | Plus |
| CG7342-RA | 2135 | CG7342-RA | 316..1935 | 17..1636 | 8100 | 100 | Plus |
| CG6231-RF | 2730 | CG6231-RF | 1343..1450 | 950..1057 | 240 | 81.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:27:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19605845..19606275 | 1206..1636 | 2155 | 100 | Plus |
| 3R | 32079331 | 3R | 19604877..19605283 | 563..969 | 2035 | 100 | Plus |
| 3R | 32079331 | 3R | 19604315..19604716 | 162..563 | 2010 | 100 | Plus |
| 3R | 32079331 | 3R | 19605349..19605584 | 970..1205 | 1180 | 100 | Plus |
| 3R | 32079331 | 3R | 19604111..19604259 | 17..165 | 745 | 100 | Plus |
| 3R | 32079331 | 3R | 19617672..19617759 | 1057..970 | 215 | 83 | Minus |
| 3R | 32079331 | 3R | 19617388..19617449 | 1344..1283 | 190 | 87.1 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:27:28 has no hits.
BO26056.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-29 17:44:44 Download gff for
BO26056.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7342-RA | 6..1620 | 22..1638 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:34:47 Download gff for
BO26056.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7342-RA | 321..1935 | 22..1638 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:53:05 Download gff for
BO26056.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7342-RA | 321..1935 | 22..1638 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:53:05 Download gff for
BO26056.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19604116..19604256 | 22..162 | 100 | -> | Plus |
| 3R | 19604316..19604716 | 163..563 | 100 | -> | Plus |
| 3R | 19604878..19605283 | 564..969 | 100 | -> | Plus |
| 3R | 19605349..19605584 | 970..1205 | 100 | -> | Plus |
| 3R | 19605845..19606275 | 1206..1638 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:34:47 Download gff for
BO26056.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15429838..15429978 | 22..162 | 100 | -> | Plus |
| arm_3R | 15430038..15430438 | 163..563 | 100 | -> | Plus |
| arm_3R | 15430600..15431005 | 564..969 | 100 | -> | Plus |
| arm_3R | 15431071..15431306 | 970..1205 | 100 | -> | Plus |
| arm_3R | 15431567..15431997 | 1206..1638 | 99 | | Plus |
BO26056.pep Sequence
Translation from 16 to 1654
> BO26056.pep
MLEVDKILEKCGDFSRLQMIMLLLFCVINVLSALHYYSQTIISFVPKYWC
ADGLPASIESPVDSSCLPLNRNISTPNTCYSYNYELYMGYQSFPSEMDWV
CADAWKLTLGQSMFFVGSVVGSMVLGYLADVVGRLPILIVANLIAMTGNL
LTIWSTNVTLFCMFRMISGIATDSNFVMMYILVMEYMRPSVRTLGLSICI
GFFYCLGSMAAPWIAVLMRSWRGFLLTTSLPLLVVPFFYLIVPESIQWLI
SKQKYDSAVVCLKRVAKINGRHVEESAYAEFIEECKCSQQNQKASPHLLD
LFQTPRLRRHTLILFFKSMVITLCYDAVSRNVQGLGISPFVMFSLSATAI
LPACLLIIALQDRIGRKAMASASLLLSGIFISVTGGIIFAASASDKTTTL
LVSLSVVGRFGVTVAYNSGAQYATELIPTCVRGQGVAAVHVAGYAFTFFS
AYILFTRSVFSPLPEIILGVLSLLGACLCLLLPETLHRTLPTSLEDGENF
GKNDRWYTFSFLEGRTQSAATLDTQNAKMYSQSTESAVYFASFLDH
BO26056.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:40:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7342-PB | 540 | CG7342-PB | 1..540 | 1..540 | 2775 | 100 | Plus |
| CG7342-PA | 540 | CG7342-PA | 1..540 | 1..540 | 2775 | 100 | Plus |
| CG6231-PF | 585 | CG6231-PF | 1..531 | 2..515 | 1369 | 49.5 | Plus |
| CG6231-PE | 585 | CG6231-PE | 1..531 | 2..515 | 1369 | 49.5 | Plus |
| CG6231-PA | 585 | CG6231-PA | 1..531 | 2..515 | 1369 | 49.5 | Plus |
