BO26086.complete Sequence
3541 bp assembled on 2010-07-15
GenBank Submission: KX799847
> BO26086.complete
GAAGTTATCAGTCGACATGAGGGGTGTTCTCAAGTGGCTGGAACGCATAG
AGTTTCCCAATAGCAAAGACAATGAGATCAGTGTCCACAATGTGTGCTAC
GCACCCGATGGCAGCCAATTGGTGGTGGCTGCGGGGGATCGGTTGCTCAT
CTACGATCCAAACGATGGCTCCTTGCTGAACACCTTGAAGGCGCACAAGG
ATACGGTCAATTGTGTGGCCTACTCGCGGGATGGCAAGCGGTTCGCCAGC
GGAGCCTCCGATAAAATGGTCATCGTGTGGTCACCTCAGCTTGAGGGACT
GCTCAAGTATTCGCACGGTGACTCCATACAGTGCATGAGCTTCAATCCTG
TTTCGCACCACCTGGCCTCGTGCTCCTTGTCGGATTTTGCCTTTTGGTCG
GCTGATCAGAAGGCGGTGCAAAAGTACAAGATATCCGCGCGTGTCAATGG
CTGCTCGTGGACCAATGATGGACAGTACCTGATCCTGGGCCTGGCCAATG
GCACCATATCCATTAGGAACAAGTTGGGCGAGGAGAAGGGGAGAATCGAT
CGGCCTGGTGGGCCCAACAGCAACGTCTTCAGTGTCCAATGTTGTCCGGC
CAGCGGTCCTGGCAGTGTGGACACCATCGGTGTGGTGGACTGGAGCCAAA
CGCTATCCTTTCACACTCTGAGCGGCCAGATGATTGGCAAGGAGCGAACC
CTGGGCTTTGATCCCTTGTGCCTGCAGTACTTTCCCAATGGGGAGTTCTG
CCTGGTGGGCGGCTGCACTGGAGGTCTACACTTCTTCACCAGGGAGGGCA
TTCGGCTGGGTACGTTGGGCGATACCTTTGACACCTGGATCTGGACAGTT
GCCCTACATCCCAATGGTCAATCCTACACCATTGGGTGTCAAGATGGAAC
CCTGGCCTGCTTCAACATTGCGTCTAGTACCGTGCATGCCCTCTACCGCG
AGCGCTATGCCTTCCGGGAAAACATGTGCGACGTGATCATTCAGCACCTG
ATCTCTGGCCAAAAGGTGCGCATCAAGTGTCGAGATTTAGTTCAGAAAAT
AGCCATTTATCGGAATCGACTGGCGGTTCAGTTGCCGGAACGTGTGGTTC
TCTATGAGCTGAGCTCTGGAGAGGATCAACCCATGCACTATAAAGTGCGC
GAGAAGATCCAGCAAAAGTTCGACTGCAGCTTGCTGGTTGTTTGTGGCCG
TCACATTGTCCTGTGCCAGGAGAAGCGTCTCCAATGTCTGGATTTCATGG
GTGTCCTGCAGCGCGAGTGGATCATGGACTCGTTCATAAGATACATCAAA
GTCACCGGTGGCCCCGTGGGAAGAGAAGGACTAATGGTGGGCTTGAAGAA
CGGCCAAGTGTTCCGAATCTTTCTCAACAACTCACTACCACTGCTCATCA
CCACTGCGGTGTCAGCGGTTCGCTGCCTGGATATCAATTCGAAGCGCAGC
AAGATCGCAGTTGTGGACGATGTGGGTCGCTTGGTTGTGCGGGACGTAAT
CAACGATACAATTTTGTACCAGGATACGGGTGTAAACAGCGTCACTTGGA
ACACGCACCTGGATTCGATGCTCTGCTATACCCACACAACAGGCGGATTA
AGCGTTCGCGTGGGGAATCTGCCGCCGAGGGCACCACAGAACATGCATGG
CGTGGTGGTGGGGCTTTGCGGAGCCACTGCCTTCTGCCTGCGCGGAAATA
TTATGCACAATACGCCTTTGGCTCTCGGTTCCACCATGTGGCAGTTCATC
GAAGCTGGATTGTTTGACGAAGCCTACCAGGTCGCCTGCCTGGGCGTGAC
CACCAGCGACTGGGAGGGATTAGCTCAATCCGCTCTGGAGGCACTGCACA
TAAATATCGCTCGCGATGCCTACGTCAAGGTGAGGAATCTTCCGTGGCTC
AAACTCATCGGTGAGCTACGAGATCAGCAACAGCGATCGGCGGTTCCTAA
AGAGGTGCTTCTCGCAGAGAATTGCGCGTTTGCCGGCAAGTTCAAGGAGG
CAGCTCGTCTATTTCTCAAATGCGGCCAGTCCTCAAGAGCACTTGAAATG
TACACAGATCTACGTATGTTCGATTTAGCCCAGGAGTATATTAAGGACGG
CACCGACCAGGAGAAGAAGGAACTGGTACGCAAGCGAGCGGAATGGGCAT
ATTCGGTTAAGGAGCCACGAGCTGCTGCGGAACTATTGCTCTCAGCTGGC
GAAAATCAGAAGGCCATTGATATTGTCGCAGAGCAAGGATGGGCCGATGT
GCTTTACGATATCGGACGACGACTGAGTCTTACGGAACGCGATTCCCTGG
AATCGGTGGCCCAGAACCTAAAGACCCTCAAAGCTCTTCCCCTGGCTGCT
GAGATTTTCAAGAAGCTGGGCGATGAAGCCCAGGTGGTGCAACTGCACAT
CGAGGTACGCGACTGGCCGGAAGCATTTCGTTTGGCGGAATCGCTGCCGG
AACTTTTGCCCACGGTGCACTACCAGCATGGGCAATGGCTGGCCGAAACG
GATCAGTTTATAGAGGCGCATCAGGCCTACATAAAGGCAGGACGCACCAA
GGAAGCCAATCGTTTGCTTAAGCAACTGAGCAATACGGCCATCGTGGAGG
AGCGCTACTTGGATGCGAGCTACTTTTATTGGCTGCTGGCCAAGCAACAT
TTAGATGTATATCACGCCAAGGAAGAACAAAATCCTGTTGATCACCACCT
TACGGAGTACAAAAATCATTTACGTGTTGCCAAGGTTTATTACGCCTACA
GTGTCATATACTCATATATGAAAGAACCATTCACCACACATTCCCCAGTT
AGCCTATTTAACGTAAGCCGCTTTATACTAAACGAAGTGGAGCACAAAGG
TGTCCCCAAAGGTGTCAGCATGTTTTCGGTTCTCTTCACTCTGGCCAAGC
AAGCTAAGTTTTTGCAGGCCAACAAGTTATGCCTTCTTATTAACAAGAGA
CTGCAGTCGTTGAAGCCACCAGCTGGAGTCCAAGAGCAGATTGATCTAAA
TTTTTTAAATAGCAAGGCTTGCAAAAGTGGCTTCAATGATCCGGAGGAGC
TTTTGCCACTTTGTTACAAGTGCTCCAACTACAGTCAACATTTGAATAGC
AATTGCTGTCCCACTTGCCGGCAGGATTATATTTTCTCTTTCGTTTCCTT
CGAAATTCTACCCCTAGTACAATTTTATCCAGAAGTGGATATATCTGATG
CCGAGGCGGAGCGCTTGCTGCTGGCTCCTGCAAAGCACGCCGAGGATTCG
GATCCATTTAACGAGGATGTGGCCAGTGCATTGCCTTTGAGCTTGGATCG
CAATGGCCTGCGTGCCATAGATCCCAATCATGTGCTGATTCTTAAACGGA
GAGGAAAGAATGTGCGGAATGTGTACTATCGTAATATATTACCCGATCTT
CAGGTTACCTATTGTCCTCAATGTCTGCTGCTTTTCTATGCGGAGGACTT
TGAGCTGCAAGTGCTGCAAAAAGGTCACTGTCCCTTTTGTCACACATCCT
CCGAAAAGCTGATGGAAGACTTTGCAAGCTTTCTAGACCAT
BO26086.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:05:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Oseg1-RB | 3510 | CG7161-PB | 1..3507 | 17..3523 | 17400 | 99.7 | Plus |
| Oseg1-RA | 3510 | CG7161-PA | 1..3507 | 17..3523 | 17400 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:05:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Oseg1-RB | 4766 | CG7161-RB | 1154..4660 | 17..3523 | 17400 | 99.7 | Plus |
| Oseg1-RA | 3714 | CG7161-RA | 102..3608 | 17..3523 | 17400 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:05:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8409589..8411043 | 1767..313 | 7275 | 100 | Minus |
| 3L | 28110227 | 3L | 8409044..8409527 | 2251..1768 | 2360 | 99.2 | Minus |
| 3L | 28110227 | 3L | 8407522..8407800 | 3430..3152 | 1365 | 99.3 | Minus |
| 3L | 28110227 | 3L | 8408712..8408986 | 2525..2251 | 1360 | 99.6 | Minus |
| 3L | 28110227 | 3L | 8411114..8411348 | 313..79 | 1175 | 100 | Minus |
| 3L | 28110227 | 3L | 8408253..8408453 | 2874..2674 | 1005 | 100 | Minus |
| 3L | 28110227 | 3L | 8407856..8408012 | 3152..2996 | 755 | 98.7 | Minus |
| 3L | 28110227 | 3L | 8408511..8408659 | 2673..2525 | 745 | 100 | Minus |
| 3L | 28110227 | 3L | 8408071..8408191 | 2995..2875 | 605 | 100 | Minus |
| 3L | 28110227 | 3L | 8407374..8407467 | 3523..3430 | 470 | 100 | Minus |
| 3L | 28110227 | 3L | 8411429..8411493 | 81..17 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 05:05:20 has no hits.
BO26086.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-15 10:01:16 Download gff for
BO26086.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oseg1-RA | 83..3589 | 17..3525 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:06:13 Download gff for
BO26086.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oseg1-RA | 102..3608 | 17..3525 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:43:36 Download gff for
BO26086.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oseg1-RA | 102..3608 | 17..3525 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:43:36 Download gff for
BO26086.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8408712..8408986 | 2251..2525 | 99 | <- | Minus |
| 3L | 8408253..8408453 | 2674..2874 | 100 | <- | Minus |
| 3L | 8408511..8408658 | 2526..2673 | 100 | <- | Minus |
| 3L | 8407371..8407466 | 3431..3525 | 97 | <- | Minus |
| 3L | 8407522..8407799 | 3153..3430 | 99 | <- | Minus |
| 3L | 8407856..8408012 | 2996..3152 | 98 | <- | Minus |
| 3L | 8408071..8408191 | 2875..2995 | 100 | <- | Minus |
| 3L | 8409045..8409527 | 1768..2250 | 99 | <- | Minus |
| 3L | 8409589..8411043 | 313..1767 | 100 | <- | Minus |
| 3L | 8411115..8411345 | 82..312 | 100 | <- | Minus |
| 3L | 8411429..8411493 | 17..81 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:06:13 Download gff for
BO26086.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8401812..8402086 | 2251..2525 | 99 | <- | Minus |
| arm_3L | 8401171..8401291 | 2875..2995 | 100 | <- | Minus |
| arm_3L | 8401353..8401553 | 2674..2874 | 100 | <- | Minus |
| arm_3L | 8401611..8401758 | 2526..2673 | 100 | <- | Minus |
| arm_3L | 8400471..8400566 | 3431..3525 | 97 | <- | Minus |
| arm_3L | 8400622..8400899 | 3153..3430 | 99 | <- | Minus |
| arm_3L | 8400956..8401112 | 2996..3152 | 98 | <- | Minus |
| arm_3L | 8402145..8402627 | 1768..2250 | 99 | <- | Minus |
| arm_3L | 8402689..8404143 | 313..1767 | 100 | <- | Minus |
| arm_3L | 8404215..8404445 | 82..312 | 100 | <- | Minus |
| arm_3L | 8404529..8404593 | 17..81 | 100 | | Minus |
BO26086.pep Sequence
Translation from 16 to 3541
> BO26086.pep
MRGVLKWLERIEFPNSKDNEISVHNVCYAPDGSQLVVAAGDRLLIYDPND
GSLLNTLKAHKDTVNCVAYSRDGKRFASGASDKMVIVWSPQLEGLLKYSH
GDSIQCMSFNPVSHHLASCSLSDFAFWSADQKAVQKYKISARVNGCSWTN
DGQYLILGLANGTISIRNKLGEEKGRIDRPGGPNSNVFSVQCCPASGPGS
VDTIGVVDWSQTLSFHTLSGQMIGKERTLGFDPLCLQYFPNGEFCLVGGC
TGGLHFFTREGIRLGTLGDTFDTWIWTVALHPNGQSYTIGCQDGTLACFN
IASSTVHALYRERYAFRENMCDVIIQHLISGQKVRIKCRDLVQKIAIYRN
RLAVQLPERVVLYELSSGEDQPMHYKVREKIQQKFDCSLLVVCGRHIVLC
QEKRLQCLDFMGVLQREWIMDSFIRYIKVTGGPVGREGLMVGLKNGQVFR
IFLNNSLPLLITTAVSAVRCLDINSKRSKIAVVDDVGRLVVRDVINDTIL
YQDTGVNSVTWNTHLDSMLCYTHTTGGLSVRVGNLPPRAPQNMHGVVVGL
CGATAFCLRGNIMHNTPLALGSTMWQFIEAGLFDEAYQVACLGVTTSDWE
GLAQSALEALHINIARDAYVKVRNLPWLKLIGELRDQQQRSAVPKEVLLA
ENCAFAGKFKEAARLFLKCGQSSRALEMYTDLRMFDLAQEYIKDGTDQEK
KELVRKRAEWAYSVKEPRAAAELLLSAGENQKAIDIVAEQGWADVLYDIG
RRLSLTERDSLESVAQNLKTLKALPLAAEIFKKLGDEAQVVQLHIEVRDW
PEAFRLAESLPELLPTVHYQHGQWLAETDQFIEAHQAYIKAGRTKEANRL
LKQLSNTAIVEERYLDASYFYWLLAKQHLDVYHAKEEQNPVDHHLTEYKN
HLRVAKVYYAYSVIYSYMKEPFTTHSPVSLFNVSRFILNEVEHKGVPKGV
SMFSVLFTLAKQAKFLQANKLCLLINKRLQSLKPPAGVQEQIDLNFLNSK
ACKSGFNDPEELLPLCYKCSNYSQHLNSNCCPTCRQDYIFSFVSFEILPL
VQFYPEVDISDAEAERLLLAPAKHAEDSDPFNEDVASALPLSLDRNGLRA
IDPNHVLILKRRGKNVRNVYYRNILPDLQVTYCPQCLLLFYAEDFELQVL
QKGHCPFCHTSSEKLMEDFASFLDH
BO26086.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:33:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Oseg1-PB | 1169 | CG7161-PB | 1..1169 | 1..1169 | 6160 | 100 | Plus |
| Oseg1-PA | 1169 | CG7161-PA | 1..1169 | 1..1169 | 6160 | 100 | Plus |
| Oseg4-PB | 1205 | CG2069-PB | 712..967 | 599..855 | 183 | 27.8 | Plus |
| Oseg4-PA | 1205 | CG2069-PA | 712..967 | 599..855 | 183 | 27.8 | Plus |
