BO26112.complete Sequence
1084 bp assembled on 2010-06-29
GenBank Submission: KX799527
> BO26112.complete
GAAGTTATCAGTCGACATGTCGATGATATTCAACACGGAGTATGGCTACC
TGGAGGCCCTAACGCGCGGATTCAAGAACGGCATGCTAAAGCACTCGGAC
TATCTAAATCTGACCCAGTGTGAATCCCTCGAGGACGTAATGATCAGCAT
CCAGGGCACGGATTACGGTCTCATCTTTGGTGGCGAACAATCAGCGCCGT
CCGTTGAGGTGATCGAAAGATGCCTTAGGGATCGTCTGCTGCAGCAATAC
TACTACATACGCAGTCATTCGACGGAGCCGCTGACCACCTTTATGGAGTT
CATACGATATCCGTTCATGATCGATAATGTGGCGCTTCTGGTCGCTGGCC
TAAACAATCACCGATCCATGAAGCGTCTGCTAAGAATGTGTCATCCGCTG
GGCGAATTCGATCAACTGGGCGCCATCGAAGTGGCCTCGAATTCTGCGGA
GCTCTTCGACGCCGTTCTAATTGACACGCCCATCGCTCGGTTTGTGCCAC
GCGATTTGCCCATGGAGTCGTTGCGTTACCTCGACGTGGAGATTGTGCGT
GCCCATCTGTATCGTGCTTATTTGGAGAAATTCTACGCCTATTGCAGCCA
ACTGGGCGGCAATACCGCCAACGTGATGACCAATCTATTGTCCTTCGAGG
CGGATCGTCGGACCATTACAATAGCTGTGAACGCTATTGGCAGTGATATC
ATACCGAAGGAGCGTCTAAAGATGTTCCCCACCTGTGGCTACCTGCCCAA
AATAGCCTTGGCCTCCATGTCCACTTTAAATGATACGGATAAAATAAGGG
ATGTTTGCAATGTGTTCGATGGCTATGGCAAAATGTTTGACAATTTGGAG
CGCGACTCGGACGGCATGATTACGCTGGAGGACCGCTTTCTCATGATGGA
GGCCAAGAAGAATGTGCAGACCTTCCTGCAGCAGTACCATTTCGGGATCT
TCTACTCGTTCATTAAACTTAAACAGTTGGAGGTACGCAATATCGTCTGG
ATTAGCGAATGCATAGCGCAGCGACAGACGGACAGAATCAACGCCTTCAT
TCCCATACCCTTGGACGCAAGCTTTCTAGACCAT
BO26112.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:33:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| VhaAC39-2-RA | 1053 | CG4624-PA | 1..1050 | 17..1066 | 5250 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:33:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| VhaAC39-2-RA | 1233 | CG4624-RA | 71..1127 | 10..1066 | 5255 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:33:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23158554..23159246 | 702..10 | 3435 | 99.7 | Minus |
| 3R | 32079331 | 3R | 23158123..23158490 | 1066..699 | 1825 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:33:02 has no hits.
BO26112.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-29 17:45:41 Download gff for
BO26112.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4624-RA | 78..1127 | 17..1068 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:37:05 Download gff for
BO26112.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| VhaAC39-2-RA | 78..1127 | 17..1068 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:55:14 Download gff for
BO26112.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| VhaAC39-2-RA | 78..1127 | 17..1068 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:55:14 Download gff for
BO26112.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23158121..23158486 | 703..1068 | 99 | <- | Minus |
| 3R | 23158554..23159239 | 17..702 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:37:05 Download gff for
BO26112.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18983843..18984208 | 703..1068 | 99 | <- | Minus |
| arm_3R | 18984276..18984961 | 17..702 | 100 | | Minus |
BO26112.pep Sequence
Translation from 16 to 1084
> BO26112.pep
MSMIFNTEYGYLEALTRGFKNGMLKHSDYLNLTQCESLEDVMISIQGTDY
GLIFGGEQSAPSVEVIERCLRDRLLQQYYYIRSHSTEPLTTFMEFIRYPF
MIDNVALLVAGLNNHRSMKRLLRMCHPLGEFDQLGAIEVASNSAELFDAV
LIDTPIARFVPRDLPMESLRYLDVEIVRAHLYRAYLEKFYAYCSQLGGNT
ANVMTNLLSFEADRRTITIAVNAIGSDIIPKERLKMFPTCGYLPKIALAS
MSTLNDTDKIRDVCNVFDGYGKMFDNLERDSDGMITLEDRFLMMEAKKNV
QTFLQQYHFGIFYSFIKLKQLEVRNIVWISECIAQRQTDRINAFIPIPLD
ASFLDH
BO26112.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:30:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| VhaAC39-2-PA | 350 | CG4624-PA | 1..350 | 1..350 | 1812 | 100 | Plus |
| VhaAC39-1-PA | 350 | CG2934-PA | 7..349 | 4..347 | 863 | 46.2 | Plus |
