Clone BO26113 Report

Search the DGRC for BO26113

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:261
Well:13
Vector:pDNR-Dual
Associated Gene/TranscriptCG5084-RA
Protein status:BO26113.pep: Imported from assembly
Sequenced Size:736

Clone Sequence Records

BO26113.complete Sequence

736 bp assembled on 2010-06-29

GenBank Submission: KX798717

> BO26113.complete
GAAGTTATCAGTCGACATGCAGCTTTTCACACGAGTTATCCTGTTGGCCG
TGACCATTTTCAGCGTCAGTGCCGTGCCGCGTTTTGGAGAAGATATTGGT
CTGGAGGAGGTCCTATTCCGCATGGTCCTTGGTGAGGCTGAGGGTCGAGG
TCTGACTCCTGCTGCCCAGACTTGTGCCAACATCTACCTGAACACCACCC
AGAAGAACGGCGATAAGTTGGCCAATGCCACCAATGCTTGCGAGGAGGCA
GCCAATCGCACCAATGTCGCCTACACCCAGACCAGCAACTCCACCATCAA
CCAGATCCGTCTCCAGTTGTTGACCCTGGAGCAGAACCTGCAGCTGTGCC
GCAACGAGACCGATTCGGCTATTTTCCTGAACTGCACTGTGTCCACTTTC
GACAAGAACCTCCAGCTGCTGGACACCTCCAACTCGCAGGCCTACCGTGC
TCAGTCCCAGTTCGTTTCCAATGCCACTCAGATGAATGCCGAGAAATCGA
ACTGCATCAGCTCCGCTGTTAGCGAGGCCAAGGTTCAGTCCATCCAGGCG
GCCAACGACTTTAATTCGTGTCTGGACAAGATCCCAGCCCAGCGTGAGGT
GCCACAAAAGATGGAGCAGCAGCTGAGAGAGCAGCAGCAGGAGAAGCCCA
CCCAGATAACCAAAGAGCAAGTGTCTGCGAAGCCACAGCTGATGTTCGAA
GATCTGCCTTTGACCAACGCAAGCTTTCTAGACCAT

BO26113.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:32:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG5084-RB 705 CG5084-PB 1..702 17..718 3510 100 Plus
CG5084-RA 705 CG5084-PA 1..702 17..718 3510 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:32:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG5084-RB 1182 CG5084-RB 27..730 15..718 3520 100 Plus
CG5084-RA 773 CG5084-RA 27..730 15..718 3520 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:31:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18019046..18019378 65..397 1665 100 Plus
2R 25286936 2R 18019439..18019759 398..718 1605 100 Plus
2R 25286936 2R 18018691..18018746 15..70 265 98.2 Plus
Blast to na_te.dros performed 2014-11-26 14:31:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2319..2387 602..670 110 65.7 Plus

BO26113.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-29 17:45:33 Download gff for BO26113.complete
Subject Subject Range Query Range Percent Splice Strand
CG5084-RA 52..753 17..720 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:36:36 Download gff for BO26113.complete
Subject Subject Range Query Range Percent Splice Strand
CG5084-RA 29..730 17..720 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:54:53 Download gff for BO26113.complete
Subject Subject Range Query Range Percent Splice Strand
CG5084-RA 29..730 17..720 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:54:53 Download gff for BO26113.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18018693..18018740 17..64 100 -> Plus
2R 18019046..18019378 65..397 100 -> Plus
2R 18019439..18019759 398..720 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:36:36 Download gff for BO26113.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13906198..13906245 17..64 100 -> Plus
arm_2R 13906551..13906883 65..397 100 -> Plus
arm_2R 13906944..13907264 398..720 99   Plus

BO26113.pep Sequence

Translation from 16 to 736

> BO26113.pep
MQLFTRVILLAVTIFSVSAVPRFGEDIGLEEVLFRMVLGEAEGRGLTPAA
QTCANIYLNTTQKNGDKLANATNACEEAANRTNVAYTQTSNSTINQIRLQ
LLTLEQNLQLCRNETDSAIFLNCTVSTFDKNLQLLDTSNSQAYRAQSQFV
SNATQMNAEKSNCISSAVSEAKVQSIQAANDFNSCLDKIPAQREVPQKME
QQLREQQQEKPTQITKEQVSAKPQLMFEDLPLTNASFLDH

BO26113.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:32:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG5084-PB 234 CG5084-PB 1..234 1..234 1169 100 Plus
CG5084-PA 234 CG5084-PA 1..234 1..234 1169 100 Plus