BO26119.complete Sequence
880 bp assembled on 2010-06-29
GenBank Submission: KX795283
> BO26119.complete
GAAGTTATCAGTCGACATGGATGGCGCAAAGGCAGAAGTATTCAGTGTTT
CCGTAGATACCAAGATGGGCGCCTTTAAAAATTCCCTGCTGCTGCTGACA
CTTCTGCTAGCCATCCATTTGGAGGCATCCAAGATAGTCTACAAGAAGCC
GCTCTATGGCAATAGCAACATCATCAAGGACAAGCGTATAAAGACGAAGC
CCGTCAAACTGGAAACCAGCACCATGAGCAGCACTGGTGTTGCAAGTAGC
AGCACAACAGCCGAAGAGGATTGGCCCACGGCCGTTGAGTTTGTGATTAT
GACAACGCCCGCAAGCGAATTGGAAGCCAGCACGGAAACCATTGGTAACA
ATGGCACCACCGAAACGACCGTTGGCGAGGCACCCATCATCGGATCGTCG
GAAGGATCCACACGATCGATGGAGCCAACCACCGCGAGTCCGCTGATGAG
CACAAACCCATCGAGCAGCAGCAGTCTGGTTAGCACCATTCCCTTGCCAC
CGACAGCGGGACTGCCTGTGCAGGATAATCAGCCAGTGCCGTGCACATGC
GGCGTCTTCCTCTCCTCGCAAATCCCAAATGGCTTGCCGACAAAGCCACT
TATCCACCAGGAATTGGATCATATGTTTCCCTGCAATGCCATCGGTCGCA
AGCAGTGTCAAACCAAATGCCTAGAGACGATCGTACAACATCTGCCGAAT
TCCGCAAATATAGTATGCTCCGCACTGGGTCACGATTGTCACAAGGAACG
GGCCTATTTGTTCATCAAGAACTGTCACAATCAATGGGTTAATACCAATC
TGCAGGCGGGCAGGGAGTACTGTTGTCGCTCTGGCGTTCCCTACCGTTGC
CCATTGATGGGTGCAAGCTTTCTAGACCAT
BO26119.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:31:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fcp3C-RA | 849 | CG4015-PA | 1..846 | 17..862 | 4230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:31:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fcp3C-RA | 963 | CG4015-RA | 81..926 | 17..862 | 4230 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:31:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 3173668..3174279 | 679..68 | 3060 | 100 | Minus |
| X | 23542271 | X | 3173413..3173596 | 862..679 | 920 | 100 | Minus |
| X | 23542271 | X | 3174342..3174394 | 69..17 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:31:34 has no hits.
BO26119.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-29 17:45:28 Download gff for
BO26119.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fcp3C-RA | 1112..1957 | 17..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:36:26 Download gff for
BO26119.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fcp3C-RA | 81..926 | 17..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:54:46 Download gff for
BO26119.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fcp3C-RA | 81..926 | 17..864 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:54:46 Download gff for
BO26119.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 3173411..3173595 | 680..864 | 98 | <- | Minus |
| X | 3173668..3174278 | 69..679 | 100 | <- | Minus |
| X | 3174343..3174394 | 17..68 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:36:26 Download gff for
BO26119.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 3067444..3067628 | 680..864 | 98 | <- | Minus |
| arm_X | 3067701..3068311 | 69..679 | 100 | <- | Minus |
| arm_X | 3068376..3068427 | 17..68 | 100 | | Minus |
BO26119.pep Sequence
Translation from 16 to 880
> BO26119.pep
MDGAKAEVFSVSVDTKMGAFKNSLLLLTLLLAIHLEASKIVYKKPLYGNS
NIIKDKRIKTKPVKLETSTMSSTGVASSSTTAEEDWPTAVEFVIMTTPAS
ELEASTETIGNNGTTETTVGEAPIIGSSEGSTRSMEPTTASPLMSTNPSS
SSSLVSTIPLPPTAGLPVQDNQPVPCTCGVFLSSQIPNGLPTKPLIHQEL
DHMFPCNAIGRKQCQTKCLETIVQHLPNSANIVCSALGHDCHKERAYLFI
KNCHNQWVNTNLQAGREYCCRSGVPYRCPLMGASFLDH
BO26119.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:33:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fcp3C-PA | 282 | CG4015-PA | 1..282 | 1..282 | 1478 | 100 | Plus |
