Clone BO26152 Report

Search the DGRC for BO26152

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:261
Well:52
Vector:pDNR-Dual
Associated Gene/TranscriptRab21-RC
Protein status:BO26152.pep: Imported from assembly
Sequenced Size:700

Clone Sequence Records

BO26152.complete Sequence

700 bp assembled on 2010-06-29

GenBank Submission: KX798510

> BO26152.complete
GAAGTTATCAGTCGACATGAGCTCGAGCAGAACGAGGAACGGCCCCACGC
TTAATTTCAAGGCGGTGCTGCTGGGCGAAGGTTGTGTGGGCAAGACGTCG
CTGGTGCTGCGCTACATGGAAGACCGGTTCAATGCCCAGCACCTAAGCAC
CCTGCAGGCTTCCTTTGTCAGCCGCAAGATGTCCCTGGAGGATGGGAGAA
GGGCGCAGTTGAATATTTGGGACACGGCTGGTCAGGAGCGGTTCCACGCC
CTGGGACCCATCTACTATCGCGGCTCCGATGGCGCCCTGCTCGTCTATGA
CATAACGGACCGAGACTCGTTCCAGAAGGTCAAATCCTGGGTGCGGGAGC
TCCGGCAAATGCGCGGCACGGAGATTGCCTTAATAATCGTCGGCAACAAG
ACTGATTTGGAGGAACAGCGAGCAGTAACGCACGATGAGGCCCTTCAATA
TGCGCGCACGGTTGGCGCTCAATATGTAGAAACTTCGGCCAAGGAGAACG
AGGGGGTGGCTGAGCTCTTCGAGCTCCTGACCCAGCTGATGCTGGAGCAG
TTGAGCCAACGGCAACCGGATGCGAGTCCACTTCGCCTCCAGAATCCGGA
TACGGATAACCTTAACAACTCCGATGACTCGGAGGCCCCGGATCCCGGAG
ATCCTGCGGGCCAGCGGTCCTGTTGCGGCATTGCAAGCTTTCTAGACCAT

BO26152.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:30:17
Subject Length Description Subject Range Query Range Score Percent Strand
Rab21-RC 669 CG17515-PC 1..666 17..682 3330 100 Plus
Rab21-RD 669 CG17515-PD 1..666 17..682 3330 100 Plus
Rab21-RA 570 CG17515-PA 1..567 116..682 2835 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:30:18
Subject Length Description Subject Range Query Range Score Percent Strand
Rab21-RC 1064 CG17515-RC 159..824 17..682 3330 100 Plus
Rab21-RD 1050 CG17515-RD 145..810 17..682 3330 100 Plus
Rab21-RA 1077 CG17515-RA 234..837 79..682 3020 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:30:15
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 23012380..23012983 682..79 3020 100 Minus
X 23542271 X 23013041..23013106 82..17 330 100 Minus
Blast to na_te.dros performed on 2014-11-26 14:30:16 has no hits.

BO26152.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-29 17:45:14 Download gff for BO26152.complete
Subject Subject Range Query Range Percent Splice Strand
Rab21-RC 154..819 17..684 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:35:56 Download gff for BO26152.complete
Subject Subject Range Query Range Percent Splice Strand
Rab21-RD 145..810 17..684 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:54:13 Download gff for BO26152.complete
Subject Subject Range Query Range Percent Splice Strand
Rab21-RD 145..810 17..684 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:54:13 Download gff for BO26152.complete
Subject Subject Range Query Range Percent Splice Strand
X 23012376..23012981 81..684 99 <- Minus
X 23013043..23013106 17..80 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:35:56 Download gff for BO26152.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 22414212..22414817 81..684 99 <- Minus
arm_X 22414879..22414942 17..80 100   Minus

BO26152.pep Sequence

Translation from 16 to 700

> BO26152.pep
MSSSRTRNGPTLNFKAVLLGEGCVGKTSLVLRYMEDRFNAQHLSTLQASF
VSRKMSLEDGRRAQLNIWDTAGQERFHALGPIYYRGSDGALLVYDITDRD
SFQKVKSWVRELRQMRGTEIALIIVGNKTDLEEQRAVTHDEALQYARTVG
AQYVETSAKENEGVAELFELLTQLMLEQLSQRQPDASPLRLQNPDTDNLN
NSDDSEAPDPGDPAGQRSCCGIASFLDH

BO26152.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:38:05
Subject Length Description Subject Range Query Range Score Percent Strand
Rab21-PC 222 CG17515-PC 1..222 1..222 1141 100 Plus
Rab21-PD 222 CG17515-PD 1..222 1..222 1141 100 Plus
Rab21-PA 189 CG17515-PA 1..189 34..222 974 100 Plus
Rab5-PI 219 CG3664-PI 22..183 6..168 386 46 Plus
Rab5-PH 219 CG3664-PH 22..183 6..168 386 46 Plus