Clone BO26159 Report

Search the DGRC for BO26159

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:261
Well:59
Vector:pDNR-Dual
Associated Gene/TranscriptRpL23-RA
Protein status:BO26159.pep: Imported from assembly
Sequenced Size:454

Clone Sequence Records

BO26159.complete Sequence

454 bp assembled on 2010-06-29

GenBank Submission: KX794804

> BO26159.complete
GAAGTTATCAGTCGACATGTCGAAGAGAGGACGTGGAGGTACCGCGGGAG
GCAAGTTCCGCATCTCCCTCGGTTTGCCCGTGGGCGCCGTGATGAACTGT
GCCGACAACACCGGAGCCAAGAACCTGTACGTGATCGCCGTCCACGGAAT
CCGCGGTCGCCTTAACCGTCTGCCCGCCGCTGGTGTCGGCGACATGTTCG
TGGCCACCGTGAAGAAGGGAAAGCCCGAGCTCAGGAAGAAGGTCATGCCT
GCCGTGGTTATTCGGCAGCGCAAACCGTTCAGGAGGAGGGACGGGGTGTT
TATATACTTTGAGGACAATGCCGGGGTAATAGTAAACAACAAGGGCGAAA
TGAAGGGCTCGGCCATCACTGGACCGGTGGCCAAGGAATGCGCCGATCTG
TGGCCCCGTATTGCATCCAATGCAAGCTCTATAGCCGCAAGCTTTCTAGA
CCAT

BO26159.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:30:21
Subject Length Description Subject Range Query Range Score Percent Strand
RpL23-RA 423 CG3661-PA 1..420 17..436 2100 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:30:22
Subject Length Description Subject Range Query Range Score Percent Strand
RpL23-RA 542 CG3661-RA 68..487 17..436 2100 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:30:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22854645..22854860 28..243 1080 100 Plus
2R 25286936 2R 22855443..22855639 240..436 985 100 Plus
Blast to na_te.dros performed on 2014-11-26 14:30:20 has no hits.

BO26159.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-29 17:45:17 Download gff for BO26159.complete
Subject Subject Range Query Range Percent Splice Strand
RpL23-RA 73..492 17..438 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:35:57 Download gff for BO26159.complete
Subject Subject Range Query Range Percent Splice Strand
RpL23-RA 68..487 17..438 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:54:15 Download gff for BO26159.complete
Subject Subject Range Query Range Percent Splice Strand
RpL23-RA 68..487 17..438 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:54:15 Download gff for BO26159.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22854645..22854858 28..241 100 -> Plus
2R 22855445..22855639 242..438 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:35:57 Download gff for BO26159.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18742168..18742381 28..241 100 -> Plus
arm_2R 18742968..18743162 242..438 98   Plus

BO26159.pep Sequence

Translation from 16 to 454

> BO26159.pep
MSKRGRGGTAGGKFRISLGLPVGAVMNCADNTGAKNLYVIAVHGIRGRLN
RLPAAGVGDMFVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFED
NAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNASSIAASFLDH

BO26159.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:37:03
Subject Length Description Subject Range Query Range Score Percent Strand
RpL23-PA 140 CG3661-PA 1..140 1..140 719 100 Plus