BO26162.complete Sequence
568 bp assembled on 2010-06-29
GenBank Submission: KX796123
> BO26162.complete
GAAGTTATCAGTCGACATGTCCATTGCGAAGCGTGTGCAGCAATGGGCAA
CGTTCGCGCGCACTTGGCACATTTACGATTGCACTTGGCAGAATCCATTC
GAGTCGGCAAAACTGGTTAAAACGCATTTATTGGGCCTCCAAAAGCCCAT
TTACCACCCAATGAATGACTGCGGGGATCATGTGGTGCTGATCAACACGC
GGGAAATCGCCTTGCCCGGTGACGAGTGGGTGAAGAGGGTTTACTTCCAC
CACACCGGCTATCCTGGTGGCGCTTCGTGGACCCTGGCGTGGCAGCTGCA
CGAGAAGGATCCCACGATGGTGATGAAGAAGGCCGTGTACAACTCGATGC
GCGGAAATCTGCAGCGCAGGCACACCATGCAAAGACTGCACTTGTTCGCC
GACGATCAGGTGCCCGAGGAAATCCTGCAAAACGTCACGAATCAAATCCG
CACGCCGCGCTCTATTCCCCAGCGTCTGGATCATATCGACAAAGAAACGC
TGGAGAACTTCCCCAACATTATGGATTATCCCAAGGATTATATCTTGCGT
GCAAGCTTTCTAGACCAT
BO26162.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:29:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL13-RA | 537 | CG10603-PA | 1..534 | 17..550 | 2640 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:29:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL13-RA | 671 | CG10603-RA | 89..622 | 17..550 | 2640 | 99.6 | Plus |
| CG10602-RE | 2270 | CG10602-RE | 89..236 | 17..164 | 725 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:29:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18858077..18858462 | 550..165 | 1915 | 99.7 | Minus |
| 2L | 23513712 | 2L | 18858952..18859077 | 164..39 | 615 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:29:50 has no hits.
BO26162.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-29 17:45:07 Download gff for
BO26162.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL13-RA | 31..564 | 17..552 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:35:44 Download gff for
BO26162.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL13-RA | 89..622 | 17..552 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:54:00 Download gff for
BO26162.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL13-RA | 89..622 | 17..552 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:54:00 Download gff for
BO26162.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18858074..18858462 | 165..552 | 99 | <- | Minus |
| 2L | 18858952..18859075 | 41..164 | 99 | <- | Minus |
| 2L | 18859137..18859160 | 17..40 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:35:44 Download gff for
BO26162.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18858074..18858462 | 165..552 | 99 | <- | Minus |
| arm_2L | 18858952..18859075 | 41..164 | 99 | <- | Minus |
| arm_2L | 18859137..18859160 | 17..40 | 100 | | Minus |
BO26162.pep Sequence
Translation from 16 to 568
> BO26162.pep
MSIAKRVQQWATFARTWHIYDCTWQNPFESAKLVKTHLLGLQKPIYHPMN
DCGDHVVLINTREIALPGDEWVKRVYFHHTGYPGGASWTLAWQLHEKDPT
MVMKKAVYNSMRGNLQRRHTMQRLHLFADDQVPEEILQNVTNQIRTPRSI
PQRLDHIDKETLENFPNIMDYPKDYILRASFLDH
BO26162.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:41:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL13-PA | 178 | CG10603-PA | 1..178 | 1..178 | 982 | 100 | Plus |
