BO26174.complete Sequence
493 bp assembled on 2010-06-29
GenBank Submission: KX795359
> BO26174.complete
GAAGTTATCAGTCGACATGGCTGCCACTCGTCGTCTGACACGGGAACTCT
CCGATCTGGTTGAGGCCAAGATGAGCACTCTGCGCAACATCGAGAGTAGC
GATGAGTCCCTGCTGATGTGGACGGGTCTTTTGGTTCCGGAAAAGGCGCC
CTACAACAAGGGCGCCTTCCGCATCGAAATCAACTTCCCGCCCCAGTATC
CCTTTATGCCACCAAAGATCCTATTCAAGACGAAAATCTATCACCCCAAC
GTGGATGAGAAGGGGGAGGTGTGCCTGCCCATCATCAGCACAGACAACTG
GAAGCCCACAACGCGCACAGAGCAGGTGCTCCAGGCCCTGGTAGCCATCG
TCCACAACCCGGAGCCAGAACATCCGCTTCGTTCTGACCTGGCCGAGGAG
TTCGTAAGGGAGCACAAGAAGTTCATGAAGACGGCCGAAGAGTTCACCAA
GAAGAATGCGGAGAAGCGACCAGAGGCAAGCTTTCTAGACCAT
BO26174.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:28:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ubc84D-RA | 462 | CG12799-PA | 1..459 | 17..475 | 2295 | 100 | Plus |
| Ubc10-RA | 465 | CG5788-PA | 93..438 | 109..454 | 440 | 75.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:28:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ubc84D-RA | 637 | CG12799-RA | 99..557 | 17..475 | 2295 | 100 | Plus |
| Ubc10-RA | 999 | CG5788-RA | 401..746 | 109..454 | 440 | 75.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:28:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7518900..7519358 | 475..17 | 2295 | 100 | Minus |
| 2R | 25286936 | 2R | 17788665..17789010 | 454..109 | 440 | 75.1 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:28:34 has no hits.
BO26174.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-29 17:44:54 Download gff for
BO26174.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ubc84D-RA | 1..459 | 17..477 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:35:11 Download gff for
BO26174.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ubc84D-RA | 99..557 | 17..477 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:53:29 Download gff for
BO26174.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ubc84D-RA | 99..557 | 17..477 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:53:29 Download gff for
BO26174.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7518897..7519358 | 17..477 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:35:11 Download gff for
BO26174.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3344619..3345080 | 17..477 | 99 | | Minus |
BO26174.pep Sequence
Translation from 16 to 493
> BO26174.pep
MAATRRLTRELSDLVEAKMSTLRNIESSDESLLMWTGLLVPEKAPYNKGA
FRIEINFPPQYPFMPPKILFKTKIYHPNVDEKGEVCLPIISTDNWKPTTR
TEQVLQALVAIVHNPEPEHPLRSDLAEEFVREHKKFMKTAEEFTKKNAEK
RPEASFLDH
BO26174.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:46:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ubc84D-PA | 153 | CG12799-PA | 1..153 | 1..153 | 802 | 100 | Plus |
| Ubc10-PA | 154 | CG5788-PA | 1..152 | 1..152 | 581 | 66.4 | Plus |
| CG17030-PA | 180 | CG17030-PA | 9..161 | 1..152 | 358 | 41.8 | Plus |
| eff-PC | 147 | CG7425-PC | 2..146 | 3..148 | 247 | 32.2 | Plus |
| eff-PB | 147 | CG7425-PB | 2..146 | 3..148 | 247 | 32.2 | Plus |
