BO26175.complete Sequence
382 bp assembled on 2010-06-29
GenBank Submission: KX799016
> BO26175.complete
GAAGTTATCAGTCGACATGCAGATCGTTGCTCTCACCCTCGTTGCGTTTG
TGGCCATTGCCGGTGCCTCCTGCCCGTATGCAGCTCCAGCTCCAGCTTAT
TCAGCGCCCGCTGCTTCTTCTGGCTACCCGGCTCCACCATGCCCCACCAA
CTACCTGTTCAGCTGCCAGCCCAATTTGGCCCCAGCTCCTTGTGCCCAGG
AGGCCCCAGCCTATGGATCCGCCGGCGCCTACACAGAACAGGTGCCCCAC
TACGTGGGAAGTCCCAACCGAGAGCAGTTGCAGCAATTTCACCAGCGCAT
TGGAATGGCGGCTTTGATGGAGGAACTGCGCGGCTTGGGCCAAGGAATCC
AGGGTCAACAGTACGCAAGCTTTCTAGACCAT
BO26175.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:28:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vm32E-RB | 351 | CG16874-PB | 1..348 | 17..364 | 1740 | 100 | Plus |
| Vm32E-RA | 351 | CG16874-PA | 1..348 | 17..364 | 1740 | 100 | Plus |
| Vm34Ca-RA | 360 | CG9271-PA | 210..268 | 127..185 | 205 | 89.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:28:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vm32E-RB | 499 | CG16874-RB | 31..379 | 16..364 | 1745 | 100 | Plus |
| Vm32E-RA | 437 | CG16874-RA | 31..379 | 16..364 | 1745 | 100 | Plus |
| Vm34Ca-RA | 491 | CG9271-RA | 256..314 | 127..185 | 205 | 89.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:28:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11171287..11171635 | 364..16 | 1745 | 100 | Minus |
| 2L | 23513712 | 2L | 13411318..13411376 | 185..127 | 205 | 89.8 | Minus |
Blast to na_te.dros performed 2014-11-26 14:28:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-C | 11124 | TART-C TARTC 11124bp | 8764..8859 | 101..8 | 115 | 59.4 | Minus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7311..7369 | 101..43 | 106 | 64.4 | Minus |
BO26175.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-29 17:44:53 Download gff for
BO26175.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vm32E-RA | 32..379 | 17..366 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:35:10 Download gff for
BO26175.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vm32E-RA | 32..379 | 17..366 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:53:27 Download gff for
BO26175.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vm32E-RA | 32..379 | 17..366 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:53:27 Download gff for
BO26175.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11171285..11171634 | 17..366 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:35:10 Download gff for
BO26175.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11171285..11171634 | 17..366 | 99 | | Minus |
BO26175.pep Sequence
Translation from 16 to 382
> BO26175.pep
MQIVALTLVAFVAIAGASCPYAAPAPAYSAPAASSGYPAPPCPTNYLFSC
QPNLAPAPCAQEAPAYGSAGAYTEQVPHYVGSPNREQLQQFHQRIGMAAL
MEELRGLGQGIQGQQYASFLDH
BO26175.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:35:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vm32E-PB | 116 | CG16874-PB | 1..116 | 1..116 | 616 | 100 | Plus |
| Vm32E-PA | 116 | CG16874-PA | 1..116 | 1..116 | 616 | 100 | Plus |
| Vm34Ca-PA | 119 | CG9271-PA | 33..116 | 16..83 | 227 | 53.6 | Plus |
| Vm26Ab-PB | 168 | CG9046-PB | 90..160 | 15..79 | 211 | 59.2 | Plus |
| Vm26Ab-PA | 168 | CG9046-PA | 90..160 | 15..79 | 211 | 59.2 | Plus |
