BO26176.complete Sequence
814 bp assembled on 2010-06-29
> BO26176.complete
GAAGTTATCAGTCGACATGTCTGCCCAAGTGGAGAGCAATGGTGCCAGTG
AAAGTAATAACAATTGCGTCAAGGATGTCAGGCTCCTGCTGCTGCCGGAG
AATTCCACGGATTCGGATGGCAATCCGGCGAGTGTCGCATTCAGTGCGGA
ATCGCACATTGATGACCTGACACGAACCATTGACGTGGGCCATGTGAGGA
GGAAGCGATTGTGGCGGGTGCCCTGGTTTATTTTGCTGATGAGTTTTGTG
CAGATATCTTTGCACTGGATAGCTAGTGAGTGTATGCAAAAAGTACTGAT
CTTCAAACCGGAATGGAACGTCGAGTACTGGCGCCTACTGACCTATATGC
TGCTCCATTCCGATTACTGGCATCTGTCTCTCAACATTTGCTTTCAGTGC
TTTATAGGTATCTGCCTGGAAGTGGAGCAGGGTCACTGGCGTCTGGCCGT
GGTCTATATGGTGGGTGGCGTCGCTGGTTCGCTGGCCAATGCCTGGCTGC
AGCCCCATCTCCATCTGATGGGTGCCTCCGCTGGGGTCTACGCCATGCTG
GGAAGTCATGTGCCGCACCTGGTTCTGAACTTTTCGCAATTGTCGCACCG
CTTTGCCCGCATCGCCTCCCTGCTGATATTGTTACTCAGCGATGTGGGCT
TTACAACTTACCACTTTTGCCACAATCACAATCGCAATCCGCGCACCAGT
CTGGAGGCGCATATTGGAGGGGGCGTGGCCGGAATTCTGTGCGGTTTCAT
CGTCTATCGACGCCTGCAGCCAGCCAATCAAAAGGCCATTTACTTTGCAA
GCTTTCTAGACCAT
BO26176.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:28:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rho-6-RB | 792 | CG17212-PB | 1..789 | 17..796 | 3775 | 98.9 | Plus |
| rho-6-RC | 501 | CG17212-PC | 1..501 | 17..518 | 2200 | 96.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:28:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rho-6-RB | 944 | CG17212-RB | 73..861 | 17..796 | 3775 | 98.9 | Plus |
| rho-6-RC | 934 | CG17212-RC | 73..851 | 17..796 | 3590 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:28:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12130599..12130818 | 796..577 | 1100 | 100 | Minus |
| 2L | 23513712 | 2L | 12133094..12133339 | 253..17 | 1060 | 96.3 | Minus |
| 2L | 23513712 | 2L | 12130886..12131068 | 577..395 | 915 | 100 | Minus |
| 2L | 23513712 | 2L | 12131292..12131438 | 397..251 | 735 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 14:28:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy | 7469 | gypsy DMGYPF1A 7469bp Derived from M12927 (g157583) (Rel. 44, Last updated, Version 6). | 5936..5973 | 426..388 | 111 | 79.5 | Minus |
BO26176.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-29 17:44:52 Download gff for
BO26176.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rho-6-RB | 1..789 | 17..798 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:35:07 Download gff for
BO26176.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rho-6-RB | 29..817 | 17..798 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:53:25 Download gff for
BO26176.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rho-6-RB | 73..861 | 17..798 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:53:25 Download gff for
BO26176.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12130597..12130817 | 578..798 | 99 | <- | Minus |
| 2L | 12130886..12131065 | 398..577 | 100 | <- | Minus |
| 2L | 12131292..12131435 | 254..397 | 100 | <- | Minus |
| 2L | 12133094..12133339 | 17..253 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:35:07 Download gff for
BO26176.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12130886..12131065 | 398..577 | 100 | <- | Minus |
| arm_2L | 12131292..12131435 | 254..397 | 100 | <- | Minus |
| arm_2L | 12133094..12133339 | 17..253 | 96 | | Minus |
| arm_2L | 12130597..12130817 | 578..798 | 99 | <- | Minus |
BO26176.pep Sequence
Translation from 16 to 814
> BO26176.pep
MSAQVESNGASESNNNCVKDVRLLLLPENSTDSDGNPASVAFSAESHIDD
LTRTIDVGHVRRKRLWRVPWFILLMSFVQISLHWIASECMQKVLIFKPEW
NVEYWRLLTYMLLHSDYWHLSLNICFQCFIGICLEVEQGHWRLAVVYMVG
GVAGSLANAWLQPHLHLMGASAGVYAMLGSHVPHLVLNFSQLSHRFARIA
SLLILLLSDVGFTTYHFCHNHNRNPRTSLEAHIGGGVAGILCGFIVYRRL
QPANQKAIYFASFLDH
BO26176.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:18:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rho-6-PB | 263 | CG17212-PB | 1..263 | 1..260 | 1379 | 98.9 | Plus |
| rho-6-PC | 166 | CG17212-PC | 1..130 | 1..127 | 668 | 97.7 | Plus |
| rho-PB | 355 | CG1004-PB | 84..297 | 51..248 | 328 | 32.2 | Plus |
| rho-PA | 355 | CG1004-PA | 84..297 | 51..248 | 328 | 32.2 | Plus |
| ru-PA | 341 | CG1214-PA | 95..284 | 66..250 | 317 | 32.6 | Plus |
