BO26222.complete Sequence
1798 bp assembled on 2010-06-30
GenBank Submission: KX796616
> BO26222.complete
GAAGTTATCAGTCGACATGAAGGCCACCATCGATAAGGAGCTGCTGCCCA
TGAAGGCGCACTACTTTCTCTTCAACGCCGGCACCGCTCCCGTCGTCCCC
TTCATGCCCACTCTGGCCGGCCAATTGGGCTACTCCCCCGCCGTTGTGGG
CACCATGTACACTATCCTTCCCATCATCGGAATGCTGGCGAAGCCCCTCT
TTGGATACATTGCGGACCGGTACCATCGCCATCGACCCCTATTTCTGGGT
GGCCAGGTCCTCACGGGCATCGCCTTTTTCCTCATCATGTTCGTGCCGGG
AATGGAGAAGCCGTTGCCCAAGGTCGAGTTCCACTGCCACCAGGGTGTAT
CCGACATTCCGAGATTCTGCTCGGAGTACGGCGAGTGCGTGGAGAGAAAT
CTTGAGCGGTACTACGGGAACAGGACGTTGGAGTGTGAACTGAACTGCGA
GGCACAGCCCTTCATGTGGGACATAGTGTGTGAAGATTGGCTAAAGAACA
ACACGGAAAACTGTGCCGCCAATCGAACCAATACCCAGATGGAATTCGGA
GCCAGCATAACTATGCAAAAGATTGAGAATGATGGCAGCTGCATGTTCTT
CATGATTCCGCACGATCAAGGCCAGATTGCAGGCCAGAATGTCACGTTGT
ACTGCCCGAAGGAGAAGGAGTACTTCAAATCCAATTGCACCATGGACTGT
CGTGAGGACTATCTCAAGGAGCAGCTGGCGGAGAGTGCTGTGATTAACAC
GAGTAGTGCCGTAACCATGCCGCAGTTTTGGCTGTTCTTTGGCCTGCTCA
TCTTCAGCTGGATCGGCATGGCGGTGGTGGTCAGCATTGGTGACGCCATA
TGCTTTGGCATCCTCGGCGATCGTCATCACCTGTACGGCAAACAGCGCCT
GTGCGGCTCCCTTGGATGGGGAGTTTTTGCCCTCTTGGCCGGCCTCCTTG
TGGATCACATGTCATTGGGTGAGGTGAACAAGAACTACACGGCCGTGTTC
TGGATGGCTTTGCTTATCATGGGATTTGATGTGTTCGCATCATCCAAGCT
GAGGCACACGCCAACACATTTGTCGTCCAATATTTTGAAAGATGTGGGTC
AGATGTTTCTCTCGGTGCGCTGCGTTATATTTTTCTTGTGGTGCGTTGCC
ATTGGACTTGGAACGGCGCTGATATGGAACTTCCTTTTCATATACCTGGA
GGAGCTGGACAAGGCGTTCGAGGGATGCGACAGCTCGATTAAGACATTGG
AGGGCTTGGTCATGGGGATTCAGTGTTTTGGCGGTGAGCTGCCGTTCTTC
TTCCTATCCGGATGGATTCTAAAGAAAATTGGCCATGTAAACGCCATGAG
TGTGGTGCTTTTTGGATTCGGAGTGAGATTTATTCTCTACTCGATGCTTC
AGAATCCCTGGTACATCCTGCCCATCGAACTGATGAACGGGGTGACCTTC
GGTCTATTTTATGCAACAATGGCCTCCTATGCAAGCATTGTGGCACCGCC
AGGCACCGATGCTACCATGCAGAGTCTGGTTGGAGCGATATTCGAAGGCG
TTGGTGTGTCAATGGGCAGCCTGATCGCTGGACAGCTATTTGAGTCGGTC
ACTGCACGCACCACCTTTGAGATCTTCGGAATTGGTGCCTTCATTGTCTT
TGTGATCCACGTTTGCATCCAGCTGTATCTGCAGCGCAACAGCAACATCG
ACGAAAATGGCACTGTCAAGTATTTCGCACCGACAGATGCAATGCACATG
CTGAATGATCAGGAGTATAGTAGAGTTAGCGCAAGCTTTCTAGACCAT
BO26222.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:35:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sug-RE | 1767 | CG7334-PE | 1..1764 | 17..1780 | 8820 | 100 | Plus |
| Sug-RF | 1773 | CG7334-PF | 1..1770 | 17..1780 | 8725 | 99.7 | Plus |
| Sug-RC | 1815 | CG7334-PC | 1..1694 | 17..1710 | 8470 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:35:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sug-RE | 3343 | CG7334-RE | 599..2366 | 13..1780 | 8825 | 99.9 | Plus |
| Sug-RF | 3349 | CG7334-RF | 599..2372 | 13..1780 | 8730 | 99.6 | Plus |
| Sug-RC | 2782 | CG7334-RC | 599..2296 | 13..1710 | 8475 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:35:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11686724..11687559 | 219..1054 | 4180 | 100 | Plus |
| 3L | 28110227 | 3L | 11687622..11688090 | 1054..1522 | 2345 | 100 | Plus |
| 3L | 28110227 | 3L | 11688149..11688339 | 1520..1710 | 955 | 100 | Plus |
| 3L | 28110227 | 3L | 11686069..11686211 | 80..222 | 715 | 100 | Plus |
| 3L | 28110227 | 3L | 11689107..11689178 | 1709..1780 | 360 | 100 | Plus |
| 3L | 28110227 | 3L | 11684578..11684648 | 13..83 | 340 | 98.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:35:09 has no hits.
BO26222.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-30 17:33:34 Download gff for
BO26222.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sug-RE | 599..2362 | 17..1782 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:22:51 Download gff for
BO26222.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sug-RE | 603..2366 | 17..1782 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:32:10 Download gff for
BO26222.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sug-RE | 603..2366 | 17..1782 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:32:10 Download gff for
BO26222.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11684582..11684645 | 17..80 | 100 | -> | Plus |
| 3L | 11686070..11686208 | 81..219 | 100 | -> | Plus |
| 3L | 11686725..11687559 | 220..1054 | 100 | -> | Plus |
| 3L | 11687623..11688090 | 1055..1522 | 100 | -> | Plus |
| 3L | 11688152..11688338 | 1523..1709 | 100 | -> | Plus |
| 3L | 11689108..11689178 | 1710..1782 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:22:51 Download gff for
BO26222.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11677682..11677745 | 17..80 | 100 | -> | Plus |
| arm_3L | 11679170..11679308 | 81..219 | 100 | -> | Plus |
| arm_3L | 11679825..11680659 | 220..1054 | 100 | -> | Plus |
| arm_3L | 11680723..11681190 | 1055..1522 | 100 | -> | Plus |
| arm_3L | 11681252..11681438 | 1523..1709 | 100 | -> | Plus |
| arm_3L | 11682208..11682278 | 1710..1782 | 97 | | Plus |
BO26222.pep Sequence
Translation from 16 to 1798
> BO26222.pep
MKATIDKELLPMKAHYFLFNAGTAPVVPFMPTLAGQLGYSPAVVGTMYTI
LPIIGMLAKPLFGYIADRYHRHRPLFLGGQVLTGIAFFLIMFVPGMEKPL
PKVEFHCHQGVSDIPRFCSEYGECVERNLERYYGNRTLECELNCEAQPFM
WDIVCEDWLKNNTENCAANRTNTQMEFGASITMQKIENDGSCMFFMIPHD
QGQIAGQNVTLYCPKEKEYFKSNCTMDCREDYLKEQLAESAVINTSSAVT
MPQFWLFFGLLIFSWIGMAVVVSIGDAICFGILGDRHHLYGKQRLCGSLG
WGVFALLAGLLVDHMSLGEVNKNYTAVFWMALLIMGFDVFASSKLRHTPT
HLSSNILKDVGQMFLSVRCVIFFLWCVAIGLGTALIWNFLFIYLEELDKA
FEGCDSSIKTLEGLVMGIQCFGGELPFFFLSGWILKKIGHVNAMSVVLFG
FGVRFILYSMLQNPWYILPIELMNGVTFGLFYATMASYASIVAPPGTDAT
MQSLVGAIFEGVGVSMGSLIAGQLFESVTARTTFEIFGIGAFIVFVIHVC
IQLYLQRNSNIDENGTVKYFAPTDAMHMLNDQEYSRVSASFLDH
BO26222.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:10:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sug-PE | 588 | CG7334-PE | 1..588 | 1..588 | 3130 | 100 | Plus |
| Sug-PF | 590 | CG7334-PF | 1..590 | 1..588 | 3117 | 99.7 | Plus |
| Sug-PC | 604 | CG7334-PC | 1..565 | 1..565 | 3009 | 100 | Plus |
| CG15706-PF | 539 | CG15706-PF | 204..522 | 253..574 | 547 | 37.7 | Plus |
| CG15706-PE | 539 | CG15706-PE | 204..522 | 253..574 | 547 | 37.7 | Plus |
| CG15706-PF | 539 | CG15706-PF | 4..101 | 5..101 | 160 | 33.7 | Plus |
