BO26318.complete Sequence
2275 bp assembled on 2010-07-15
GenBank Submission: KX794425
> BO26318.complete
GAAGTTATCAGTCGACATGCAAAAGTCTATAACCTCCTTCTTCAAGAAGA
AATCCGATGCCACCGACAGCCCCTCGCCGCCCAAGAAAGTTCCTAAGATT
GATGCGAAGACCGAACTCCCAGATGAACCCCACATCAAGAGCGAAAGTGC
CTCCCCGGAAACTAAGCCCAAGGTAGAACCTATGTCTGTGGATTCCGAGG
AGAAGACAAGTCCGGTGAAAAATGTTAAGAAGGAACCAAAGGAAGTCGAT
GACAAGACCACTGACAAGAAGGTCACAACCATAGGTCTCAACTCCACTGC
CGCTACTAAGGAGGATGTGGAAAACTACGATCCATCCGCCGACTCCTATC
ATCCGCTCAAGAATGCCTACTGGAAGGACAAAAAGGTCACTCCCTACTTG
GCACTGGCCCGCACATTTCAAGTAATCGAGGAGACCAAAGGCCGGCTCAA
GATGATCGACACGCTGAGCAACTTCTTCTGCTCTGTGATGCTGGTCAGTC
CGGAGGATCTTGTGCCCAGCGTCTACCTCAGCATCAACCAACTGGCGCCC
GCCTACGAGGGACTGGAGCTGGGCGTTGCCGAGACCACCTTGATGAAGGC
CATTTGCAAGGCAACGGGGCGTAATTTGGCTCACATTAAATCGCAGACGC
AGCTAACCGGGGATCTGGGCATCGTGGCCGAGCAGTCGCGCGTTTCACAG
CGCATGATGTTCCAGCCAGCGCCTCTGAATGTGAGGGATGTGTTCCGGAA
GCTACGCGAAATAGCCAAGCTATCCGGTCAGTCGAAAATGGACCTGGTGT
ACAATATGTTTGTGGCCTGTCGATCGTCGGAGGCTCGCTTCTTTATCCGT
TCATTGATTGGCAAGCTAAGAATTGGCATTGCAGAGCAGAGTTTGCTCAC
AGCGCTGGCCATTGGTTTGGTGAAAAAGAACCACATCGATGATTGCAAGG
CTAGCAAGGTGCCGGATGTGTATAAGGATGAAATAGTCGACACCACTTTG
CTGTTGAAAACTGCATACTGTCAGTGTCCCAACTACGATATCATTATACC
GGCCATTCTAAAGTACGATATTAAGGAGCTGCAGGAACGCTGCCCCATGC
ATCCCGGCATGCCGCTGAGGCCCATGCTCGCCCAGCCCACCAAGGGGGTC
CATGAGGTATTTGAGAGATTCGGCGGCATGCAAATCACCTGCGAGTGGAA
ATACGATGGAGAGCGGGCCCAAATCCACCGCAACGAGAAGGGGGAGATCA
GCATATTCTCGCGCAACTCCGAGAACAACACGGCAAAATATCCGGATTTG
ATTGCCAGGAGCACTGCCTTGCTCAAGGGCGACGTAAAGTCCTACATCAT
AGACAGCGAAATTGTGGCCTGGGATGTGGAGCGCAAGCAGATTCTGCCGT
TTCAGGTGCTCAGCACGCGCAAACGGAAGAACGTTGATATCGAGGAAATC
AAGGTCCAAGTCTGTGTCTACATCTTCGATCTGCTGTACATCAATGGCAC
TGCTCTGGTGACCAAAAACCTGTCGGAGCGTCGCAAGCTCCTGTTGGAGC
ACTTTCAAGAGGTCGAGGGCGAGTGGAAGTTCGCCACTGCTCTGGACACC
AATGACATAGACGAAGTGCAGCAGTTCCTGGAGGAGTCTATCAAAGGAAA
TTGCGAGGGCCTCATGGTCAAAACATTGGATGAGGAGGCCACCTATGAGA
TTGCCAAGAGATCCCGCAACTGGCTGAAATTGAAGAAGGACTACCTATCC
AATGTGGGCGACTCACTCGATTTGGTGGTCATTGGTGGCTACAAAGGCAA
GGGCCGGCGAACTGGAACCTACGGAGGATTTTTGCTTGCCTGCTATGACA
CCGAAAACGAGGAGTATCAGAGCATATGCAAGATTGGAACTGGCTTCACT
GATGAGGACCTGCAAACGCATTCCGAGTTTTTGGGCAAACATGTGACCAG
CGCCGCCAAATCCTACTACAGATACGACCCCAGCCTGGAGCCCGATCACT
GGTTTGAACCGGTCCAGGTGTGGGAAGTCAAATGCGCGGATCTGTCGCTC
AGTCCGATCCACCGAGCAGCCATTGGCATTGTGGACGGAGAGCGGGGCAT
TTCCTTGAGATTCCCTCGGTTCATTCGGATACGCGACGACAAGAATAGCG
AAAACGCAACGGACGCCAATCAGGTGGCCCACATGTACCAGTCGCAGGAT
CAGGTTAAAAATAATCAAAAGTCGAGCACACAAATGGAGATGGAGGACGA
GTTCTACGCAAGCTTTCTAGACCAT
BO26318.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:06:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DNA-ligI-RA | 2244 | CG5602-PA | 1..2241 | 17..2257 | 11205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:06:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DNA-ligI-RA | 2386 | CG5602-RA | 85..2325 | 17..2257 | 11205 | 100 | Plus |
| Upf3-RD | 1671 | CG11184-RD | 1621..1671 | 2257..2207 | 255 | 100 | Minus |
| Upf3-RB | 1809 | CG11184-RB | 1759..1809 | 2257..2207 | 255 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:06:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23891139..23891771 | 388..1020 | 3165 | 100 | Plus |
| 2R | 25286936 | 2R | 23891826..23892453 | 1020..1647 | 3140 | 100 | Plus |
| 2R | 25286936 | 2R | 23892504..23893116 | 1645..2257 | 3065 | 100 | Plus |
| 2R | 25286936 | 2R | 23890788..23891078 | 97..387 | 1455 | 100 | Plus |
| 2R | 25286936 | 2R | 23890670..23890733 | 34..97 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 05:06:24 has no hits.
BO26318.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-15 10:01:21 Download gff for
BO26318.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5602-RA | 59..2299 | 17..2259 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:06:23 Download gff for
BO26318.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DNA-ligI-RA | 85..2325 | 17..2259 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:44:00 Download gff for
BO26318.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DNA-ligI-RA | 85..2325 | 17..2259 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:44:00 Download gff for
BO26318.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23890596..23890612 | 17..33 | 100 | -> | Plus |
| 2R | 23890670..23890732 | 34..96 | 100 | -> | Plus |
| 2R | 23890788..23891078 | 97..387 | 100 | -> | Plus |
| 2R | 23891139..23891771 | 388..1020 | 100 | -> | Plus |
| 2R | 23891827..23892452 | 1021..1646 | 100 | -> | Plus |
| 2R | 23892506..23893116 | 1647..2259 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:06:23 Download gff for
BO26318.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19778119..19778135 | 17..33 | 100 | -> | Plus |
| arm_2R | 19778193..19778255 | 34..96 | 100 | -> | Plus |
| arm_2R | 19778311..19778601 | 97..387 | 100 | -> | Plus |
| arm_2R | 19778662..19779294 | 388..1020 | 100 | -> | Plus |
| arm_2R | 19779350..19779975 | 1021..1646 | 100 | -> | Plus |
| arm_2R | 19780029..19780639 | 1647..2259 | 99 | | Plus |
BO26318.pep Sequence
Translation from 16 to 2275
> BO26318.pep
MQKSITSFFKKKSDATDSPSPPKKVPKIDAKTELPDEPHIKSESASPETK
PKVEPMSVDSEEKTSPVKNVKKEPKEVDDKTTDKKVTTIGLNSTAATKED
VENYDPSADSYHPLKNAYWKDKKVTPYLALARTFQVIEETKGRLKMIDTL
SNFFCSVMLVSPEDLVPSVYLSINQLAPAYEGLELGVAETTLMKAICKAT
GRNLAHIKSQTQLTGDLGIVAEQSRVSQRMMFQPAPLNVRDVFRKLREIA
KLSGQSKMDLVYNMFVACRSSEARFFIRSLIGKLRIGIAEQSLLTALAIG
LVKKNHIDDCKASKVPDVYKDEIVDTTLLLKTAYCQCPNYDIIIPAILKY
DIKELQERCPMHPGMPLRPMLAQPTKGVHEVFERFGGMQITCEWKYDGER
AQIHRNEKGEISIFSRNSENNTAKYPDLIARSTALLKGDVKSYIIDSEIV
AWDVERKQILPFQVLSTRKRKNVDIEEIKVQVCVYIFDLLYINGTALVTK
NLSERRKLLLEHFQEVEGEWKFATALDTNDIDEVQQFLEESIKGNCEGLM
VKTLDEEATYEIAKRSRNWLKLKKDYLSNVGDSLDLVVIGGYKGKGRRTG
TYGGFLLACYDTENEEYQSICKIGTGFTDEDLQTHSEFLGKHVTSAAKSY
YRYDPSLEPDHWFEPVQVWEVKCADLSLSPIHRAAIGIVDGERGISLRFP
RFIRIRDDKNSENATDANQVAHMYQSQDQVKNNQKSSTQMEMEDEFYASF
LDH
BO26318.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:33:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DNA-ligI-PA | 747 | CG5602-PA | 1..747 | 1..747 | 3870 | 100 | Plus |
| lig3-PA | 806 | CG17227-PA | 254..609 | 366..733 | 400 | 30.3 | Plus |
| Lig4-PA | 918 | CG12176-PA | 128..599 | 224..709 | 256 | 23.4 | Plus |
