BO26321.complete Sequence
1561 bp assembled on 2010-07-01
GenBank Submission: KX798694
> BO26321.complete
GAAGTTATCAGTCGACATGGAAGTGGAATCGAATAACAAACGCGCCACCA
ACGGCGGCCGTCACTTCACTCCACCGTCGGACTCCGATTCCAAGGAGAGT
TCCGTCGAGCGGGAGCTGAACGAAGAGATCGAGGCGGTGGAGCTAAATGG
GAGTGGTGGTGGCGGCCACTCGAACGGCCATGTTAAGAAGCTGATGGCTG
TCGAGGATGGCAGGATTAAGCGTAAGGCCAAGCGGTTAATCCAAAGACAG
AATAGTGGTTCTGGCGGCAGTGCCAATCAAACTAATGGCAATGGAGCTGC
TGGCGCTGGTGGAGCACATGGAGCAAGTGTAATGCCGCTGGGAATCAACA
GAATTATGCCGTCGCCCGGTGGCTATGTGGTGCCACATCGACGCTGGAAG
AATAGCCGGCGTTCGCGAACCATCAATCGTGGTCGAGGACTGCCCAAAAA
GGGTGGTGGCGGCGGCAAGGGCGTCTGGGGATTGCCCGGTTCCGAGGCTC
TGGCCGAGGTCTATGAGGACGAGAATGATCCTAACTACGATAGTGAGTGC
AACGATCGTAATGTGGAGCTGCGCGAGGTGATCACTGAGATAACACGCGA
GGAGTTCTTTAAGCTGGCGGAGCCCATTGTCTTGGAGTACTACGAGCACG
GGGATCCGCATGAGGTGGCACTGAGCTTTGATGAGATACTGCAGGCACCG
ATGCGCGAGCACGTCACCAGCATTCTCGTGGAGATCGCCATGGATCACAA
GGATTCGCAGCGCGAGATGACCTCGGTGCTGATCTCCGATCTCTACGGAC
GCGTTATTACCGGCAAGGATATTGAGAAGGGATTCAATATGCTGTTGGCC
AATCTGCCGGATCTCGTCCTGGACACTCCAGAGGCGCCAATCATGCTCGG
CAATTTTATGGCCCGCGCCGTGGCCGATGACTGCATTCCGCCCAAGTTTG
TGGCCAAGTCGGGGGAGGAGCTAAGACATTTGGGACTGGGCGAACATGCC
GAACAGGCCCTTCGCCGTGCTGACTCGCTTATCTACAAGCATGTGTGGGC
CCATTTGGACAATGTCTGGGGCATGGGTGGGCCACTGCGTCCAGTGAAGA
CAATCACCATGCAGATGGAGCTGCTGCTCAAGGAGTACTTATCATCGCGT
GACGTAGCCGAGGCACAGCGCTGTCTGCGTGCCCTCGAGGTGCCACACTA
TCATCACGAGCTTGTCTACGAGGCGATTGTCATGACACTGGAGTCACTTA
GCCAGACCACCGAGGAGGCCATGTGCGAGCTGCTCAAGCAGCTAGATCTC
ACCTGCCTGGTGCTGCCCGCGGGCATGGAGCAGGGTTTCTTGCGCGCCTT
CGACGACATGGCCGACATCGTTTTGGATGTGCCCCTGGCCTATATAATAC
TCGATCGCTTCGTCGAGCGCTGCAATCGCGCCGGATTCCTAACCGACAAG
ATTATAAACAATGTGCCATCGCGCGGACGCAAGCGTTTCGTTTCGGAGGG
CGACGGCGGCCACGTGAAGCCGACTACCTTCACCATGCGTGATGCAAGCT
TTCTAGACCAT
BO26321.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:05:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pdcd4-RD | 1530 | CG10990-PD | 1..1527 | 17..1543 | 7635 | 100 | Plus |
| Pdcd4-RC | 1530 | CG10990-PC | 1..1527 | 17..1543 | 7635 | 100 | Plus |
| Pdcd4-RB | 1530 | CG10990-PB | 1..1527 | 17..1543 | 7635 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:05:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pdcd4-RD | 3008 | CG10990-RD | 280..1806 | 17..1543 | 7635 | 100 | Plus |
| Pdcd4-RC | 3426 | CG10990-RC | 698..2224 | 17..1543 | 7635 | 100 | Plus |
| Pdcd4-RB | 3240 | CG10990-RB | 512..2038 | 17..1543 | 7635 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:05:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13750585..13751902 | 1334..17 | 6590 | 100 | Minus |
| X | 23542271 | X | 13750316..13750457 | 1473..1332 | 710 | 100 | Minus |
| X | 23542271 | X | 13746779..13746849 | 1543..1473 | 355 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:05:56 has no hits.
BO26321.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-01 17:59:07 Download gff for
BO26321.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10990-RB | 479..2005 | 17..1545 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:10:45 Download gff for
BO26321.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdcd4-RB | 512..2038 | 17..1545 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:21:40 Download gff for
BO26321.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdcd4-RB | 512..2038 | 17..1545 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:21:40 Download gff for
BO26321.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13746777..13746848 | 1474..1545 | 97 | <- | Minus |
| X | 13750316..13750455 | 1334..1473 | 100 | <- | Minus |
| X | 13750586..13751902 | 17..1333 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:10:45 Download gff for
BO26321.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13640810..13640881 | 1474..1545 | 97 | <- | Minus |
| arm_X | 13644349..13644488 | 1334..1473 | 100 | <- | Minus |
| arm_X | 13644619..13645935 | 17..1333 | 100 | | Minus |
BO26321.pep Sequence
Translation from 16 to 1561
> BO26321.pep
MEVESNNKRATNGGRHFTPPSDSDSKESSVERELNEEIEAVELNGSGGGG
HSNGHVKKLMAVEDGRIKRKAKRLIQRQNSGSGGSANQTNGNGAAGAGGA
HGASVMPLGINRIMPSPGGYVVPHRRWKNSRRSRTINRGRGLPKKGGGGG
KGVWGLPGSEALAEVYEDENDPNYDSECNDRNVELREVITEITREEFFKL
AEPIVLEYYEHGDPHEVALSFDEILQAPMREHVTSILVEIAMDHKDSQRE
MTSVLISDLYGRVITGKDIEKGFNMLLANLPDLVLDTPEAPIMLGNFMAR
AVADDCIPPKFVAKSGEELRHLGLGEHAEQALRRADSLIYKHVWAHLDNV
WGMGGPLRPVKTITMQMELLLKEYLSSRDVAEAQRCLRALEVPHYHHELV
YEAIVMTLESLSQTTEEAMCELLKQLDLTCLVLPAGMEQGFLRAFDDMAD
IVLDVPLAYIILDRFVERCNRAGFLTDKIINNVPSRGRKRFVSEGDGGHV
KPTTFTMRDASFLDH
BO26321.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:27:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pdcd4-PD | 509 | CG10990-PD | 1..509 | 1..509 | 2654 | 100 | Plus |
| Pdcd4-PC | 509 | CG10990-PC | 1..509 | 1..509 | 2654 | 100 | Plus |
| Pdcd4-PB | 509 | CG10990-PB | 1..509 | 1..509 | 2654 | 100 | Plus |
| Pdcd4-PA | 509 | CG10990-PA | 1..509 | 1..509 | 2654 | 100 | Plus |
