BO26328.complete Sequence
3238 bp assembled on 2010-07-15
GenBank Submission: KX793968
> BO26328.complete
GAAGTTATCAGTCGACATGGAACAGCAGCAATCAAAAAATAATGCTCACG
TCTCAAAGTTGTTCATTTGTACGGCTGTTGATTGCAAAGATGATATTGAG
GAGAAATTCGAGCGTTCGTTTGTCACTCTGCAGATGCAAATTTCTGGCCT
TAGTGACAAAGAGATGCATGATATGTTGTCACAAGCTGTGTGTAAAGAAA
AACAGCATGAAGAAATATCAATCGGCTTTCTCTACATAATGCTTACCGAC
CCTTCTATGGCTTCCAAAACATATCGGGACGTTACTCTCGTATCTAGAGA
CGGAATGAATGGCATTGTCACAAATCTCACGTTTCTGGTCGCTGAGAAAT
ATACAAAGCTCACGGAGGTAGCGAGAAGGCAATTAATTTGGTTGTTACGG
GAATTCGTAAAGCACCAGGTTCTAAGTGTTGAAAATGTTATATGGAACTG
TTTGCGTCAGGCTGGCGGAGGAGATGTTTCCTCCAGAAACCTTTTTCTTA
TCGAGAGCCTTTTGGACATATTCATCGAATTTAGAACGTGGTTGGAAACC
AACCCATTTCTCGTTCAGTCTACAGTTTACAGCTTCGTACGCCTAATAGA
AGATCACGCTAACCCTGCTCTCTTGTCGCTTCGGCAGAAAGAAGTGAAGT
TTACGATATCATTGATCCGAGAAAGGTTCCATGATATTATACCTCTAGGA
AGAGATTTTGTACGCCTCCTACAAAACGTAGCTCGAATTCCTGAGTTTGA
ACAACTGTGGCGGGATATTCTTTTCAATCCTAAAATGTTGCATCAAACTT
TTAACGGAATTTGGCAACTACTGCATATACGGACAAGTCGAAGGTTTCTG
CAATGCCGTCTGCTGCCTGAGATGGAACGAAAAATAAGCTTCTTAGCATC
TTCTGTTAAGTTTGGAAATCAGAAGAGATACCAAGATTGGTTTCAGGACA
AATACTTTGCTACACCTGAGTCTCATAGCTTGCGATCTGATCTAATTCGA
TTTATCATAAATGTCATCCATCCCACAAACGATATGTTGTGCTCTGATAT
TATACCGCGATGGGCAATCATAGGTTGGCTCATCTCGTCCTGCACCAATC
CAATCGCTTCTGCTAATGCAAAGTTGTCATTGTTTTATGATTGGTTATTT
TTTGATCCTGCCAAGGATAATATAATGAATATAGAGCCTGGAATTTTAGT
TATGTACCACTCTATAAGAAATCATCCATTTGTTAGTAGCACGCTGTTGG
ATTTCTTATGCCGTATTACAAAAAACTTTTTCGTAAAACATGAAGATAAA
ATTCGCATTGGTGTTTATAATTCATTGAAATTAATTCTTGAAAAGCAGGT
GATACCAAATCTGCAACCACTTTTTGAGTCACCCAAACTTGACAGAGAAC
TGCGTAATTTAATAAGGGACAATTTTAGAGAGTTTTTATCACCGCCGGCT
AATCACGGACAGCTACTGTTCACTTCCCTGCATCCAGTTCAGGGTCATAT
TTTAAAAAAAGAGAGCGATCAAAGAATTTTACATTGTGAAAACATGGACC
TTCATGAAACTGGGCTCATAAATATTAGTGGGACAATCGATGAAGACAAA
AAGATCTTACTCGTGCCAACGGATCAAGAAATTGAAAGTGTTTTTAGCGA
CGAAACTGCTGAAAATTTAAGAAGAGTTCACAACATTGAGGACAATACGG
ATGACGACGATGACCTACCATTATCAGAGGTAAGACTTAAAGAAAAGCCA
AAGGTAGAACTAGCAGAAGCAATAGCCGAATCTTTTGATGCATTTGTTAC
GAAGCGTAACTCATACACTTGGGAGGCGTTTTTGAAAGATTTCCGGCCAT
TACCAGCGTCTGCGTTTGAAGAGTTTCAGCTGAACTATGTGATATCAAAT
ACTGTTTTAATTTTACGGGAGACTTTGCCTCAACAAAATATATTTTCCGA
GAGCAAAACCGAAGAAAAACATTTGGCAAAAAGTATAAGTTATCCTTTGT
ACGGTTTGTTTCGATTTTTATATGAAAACGACGAAAAAAGCAAAAAACCA
TTTCAAACCTTGCTGTCAGAAATCTGTGAAGGAATACCTGAAATTGGCTA
TTTGCTTCTGTACTTTATGAAAATTTATTGTAAGCTTCAAACGCGCAAAA
ACTCCCAACAATCATATCAGTTTAAAACAACTATTTATCGACAAATTTGC
GATGCGGCAGATGAGAAAATCGGCAATTGTCTGTTACGGGATCTTGATCT
GCTAGAAAAGGAAAACACAAATATTTTTTTATGGCTCCTGCCTGATATAT
ATAGAGAGTTTAAGTCAATAGCAACAAATAACACTGATCTTTTGCGAATA
ACACTGCGTTGCATAGATGCAAAAAATGTGCGTGACATATTATACTCAAT
CGCACAAGGAAAACTTACAATATTTAAACAAGATGGTCTCATTGATTGCA
TAAGGCAAAGTCTCGAGTTTGAGACATACGAACAGTTTTGCCTTTGGCAA
ATTGTTCAAGCTCACGATGTACCCTTAAGGTGTATACAGGACATATTGCC
AGAACTGGAAGCCGGAAGTCATCCCGAAGCTTTAAGCCATTTTCTGTTAT
TGCTTAAAAATGAAGAACCCACAAATGAAATTATTCGATTAATGCTTAGC
AGAGAATCGAAGTCGAAAGGTGATCCATTCGTAACCTCAGCCTTAAGATT
CTGGTGTCAACGCTATGAAGAAAAACTGTCTGAAATCATTGCTTCCCTGC
TTACATCAAAATACCCCAGTTCATCTCCCAACAAAAGAAAACGACCCCCC
AAGGGGATTTCTGTCTCGACTAGCACTCCTTCTGCTGATCAAGTATTAAA
TCATCTGGAGCATTATAGAAGAAGTTGCAGACATGGCACTGGAACTGGCC
TTTACGTTCATGATATGATGCAGAGAGCACTTCAATCGGCTTACTCTCAC
AGTAATGATAGTACTAAGAAACAATTTTGTGATTTGTTCGCCCTGGCAGC
GGAAGAAGATACCACAGTTGGCCGACGTGGGGGAAGCGGACGTGGACGTA
AACAACCAGGGAGTAAGAAAGATGTCAATAATCATGGGACAAGTAAAAAA
AATCCCGAGATGGTTAAAACAATATATTCCTCCGATGACAATTCTAGCGA
GGAGGATTGGTCAAAATCTAAAATATTGCAAACGGCTAAGAGAAGGAAAA
AAGCTAACAATGATTCTGACGCAAGCTTTCTAGACCAT
BO26328.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:00:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| IntS3-RA | 3207 | CG17665-PA | 1..3204 | 17..3220 | 16020 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:00:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| IntS3-RA | 3382 | CG17665-RA | 88..3291 | 17..3220 | 16020 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:00:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 4236913..4237732 | 2540..1721 | 4070 | 99.8 | Minus |
| 2R | 25286936 | 2R | 4238516..4239157 | 1355..714 | 3195 | 99.8 | Minus |
| 2R | 25286936 | 2R | 4242089..4242701 | 714..102 | 3065 | 100 | Minus |
| 2R | 25286936 | 2R | 4238017..4238210 | 1731..1538 | 970 | 100 | Minus |
| 2R | 25286936 | 2R | 4238273..4238465 | 1538..1346 | 965 | 100 | Minus |
| 2R | 25286936 | 2R | 4235994..4236179 | 3152..2967 | 930 | 100 | Minus |
| 2R | 25286936 | 2R | 4236699..4236858 | 2697..2538 | 800 | 100 | Minus |
| 2R | 25286936 | 2R | 4236410..4236559 | 2845..2696 | 750 | 100 | Minus |
| 2R | 25286936 | 2R | 4236237..4236362 | 2968..2843 | 630 | 100 | Minus |
| 2R | 25286936 | 2R | 4242761..4242847 | 103..17 | 435 | 100 | Minus |
| 2R | 25286936 | 2R | 4235870..4235940 | 3220..3150 | 355 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:00:32 has no hits.
BO26328.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-15 11:35:29 Download gff for
BO26328.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17665-RA | 93..3296 | 17..3222 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:41:53 Download gff for
BO26328.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| IntS3-RA | 88..3291 | 17..3222 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:16:11 Download gff for
BO26328.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| IntS3-RA | 88..3291 | 17..3222 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:16:11 Download gff for
BO26328.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 4236914..4237723 | 1730..2539 | 100 | <- | Minus |
| 2R | 4238019..4238209 | 1539..1729 | 100 | <- | Minus |
| 2R | 4235866..4235938 | 3152..3222 | 97 | <- | Minus |
| 2R | 4235995..4236177 | 2969..3151 | 100 | <- | Minus |
| 2R | 4236237..4236362 | 2843..2968 | 100 | <- | Minus |
| 2R | 4236413..4236557 | 2698..2842 | 100 | <- | Minus |
| 2R | 4236699..4236856 | 2540..2697 | 100 | <- | Minus |
| 2R | 4238273..4238462 | 1349..1538 | 100 | <- | Minus |
| 2R | 4238523..4239156 | 715..1348 | 100 | <- | Minus |
| 2R | 4242089..4242699 | 104..714 | 100 | <- | Minus |
| 2R | 4242761..4242847 | 17..103 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:41:53 Download gff for
BO26328.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 124419..125228 | 1730..2539 | 100 | <- | Minus |
| arm_2R | 125524..125714 | 1539..1729 | 100 | <- | Minus |
| arm_2R | 125778..125967 | 1349..1538 | 100 | <- | Minus |
| arm_2R | 123371..123443 | 3152..3222 | 97 | <- | Minus |
| arm_2R | 123500..123682 | 2969..3151 | 100 | <- | Minus |
| arm_2R | 123742..123867 | 2843..2968 | 100 | <- | Minus |
| arm_2R | 123918..124062 | 2698..2842 | 100 | <- | Minus |
| arm_2R | 124204..124361 | 2540..2697 | 100 | <- | Minus |
| arm_2R | 126028..126661 | 715..1348 | 100 | <- | Minus |
| arm_2R | 129594..130204 | 104..714 | 100 | <- | Minus |
| arm_2R | 130266..130352 | 17..103 | 100 | | Minus |
BO26328.pep Sequence
Translation from 16 to 3238
> BO26328.pep
MEQQQSKNNAHVSKLFICTAVDCKDDIEEKFERSFVTLQMQISGLSDKEM
HDMLSQAVCKEKQHEEISIGFLYIMLTDPSMASKTYRDVTLVSRDGMNGI
VTNLTFLVAEKYTKLTEVARRQLIWLLREFVKHQVLSVENVIWNCLRQAG
GGDVSSRNLFLIESLLDIFIEFRTWLETNPFLVQSTVYSFVRLIEDHANP
ALLSLRQKEVKFTISLIRERFHDIIPLGRDFVRLLQNVARIPEFEQLWRD
ILFNPKMLHQTFNGIWQLLHIRTSRRFLQCRLLPEMERKISFLASSVKFG
NQKRYQDWFQDKYFATPESHSLRSDLIRFIINVIHPTNDMLCSDIIPRWA
IIGWLISSCTNPIASANAKLSLFYDWLFFDPAKDNIMNIEPGILVMYHSI
RNHPFVSSTLLDFLCRITKNFFVKHEDKIRIGVYNSLKLILEKQVIPNLQ
PLFESPKLDRELRNLIRDNFREFLSPPANHGQLLFTSLHPVQGHILKKES
DQRILHCENMDLHETGLINISGTIDEDKKILLVPTDQEIESVFSDETAEN
LRRVHNIEDNTDDDDDLPLSEVRLKEKPKVELAEAIAESFDAFVTKRNSY
TWEAFLKDFRPLPASAFEEFQLNYVISNTVLILRETLPQQNIFSESKTEE
KHLAKSISYPLYGLFRFLYENDEKSKKPFQTLLSEICEGIPEIGYLLLYF
MKIYCKLQTRKNSQQSYQFKTTIYRQICDAADEKIGNCLLRDLDLLEKEN
TNIFLWLLPDIYREFKSIATNNTDLLRITLRCIDAKNVRDILYSIAQGKL
TIFKQDGLIDCIRQSLEFETYEQFCLWQIVQAHDVPLRCIQDILPELEAG
SHPEALSHFLLLLKNEEPTNEIIRLMLSRESKSKGDPFVTSALRFWCQRY
EEKLSEIIASLLTSKYPSSSPNKRKRPPKGISVSTSTPSADQVLNHLEHY
RRSCRHGTGTGLYVHDMMQRALQSAYSHSNDSTKKQFCDLFALAAEEDTT
VGRRGGSGRGRKQPGSKKDVNNHGTSKKNPEMVKTIYSSDDNSSEEDWSK
SKILQTAKRRKKANNDSDASFLDH
BO26328.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:10:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| IntS3-PA | 1068 | CG17665-PA | 1..1068 | 1..1068 | 5557 | 100 | Plus |
